diff feature_get_features.xml @ 0:1494f2f25439 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author gga
date Thu, 21 Jun 2018 08:46:03 -0400
parents
children d3ffd510c98a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/feature_get_features.xml	Thu Jun 21 08:46:03 2018 -0400
@@ -0,0 +1,53 @@
+<?xml version="1.0"?>
+<tool id="feature_get_features" name="Chado features get" version="@WRAPPER_VERSION@.0">
+ <description></description>
+	<macros>
+		<import>macros.xml</import>
+	</macros>
+	<expand macro="requirements"/>
+    <code file="chado.py"/>
+	<command detect_errors="aggressive"><![CDATA[
+@AUTH@
+
+chakin feature get_features
+
+#if $organism:
+  --organism_id '$organism'
+#end if
+#if $analysis_id:
+  --analysis_id '$analysis_id'
+#end if
+#if $name:
+  --name '$name'
+#end if
+#if $uniquename:
+  --uniquename '$uniquename'
+#end if
+
+| jq -S . > $results
+    ]]></command>
+	<inputs>
+    <!-- arguments -->
+
+    <!-- options -->
+    <param argument="--organism"
+           type="select"
+           dynamic_options="list_organisms()"
+           label="Organism" />
+	<param argument="--analysis_id"
+		type="select"
+		dynamic_options="list_analyses()"
+		label="Analysis" />
+	<param name="name" label="Name" argument="name" type="text" help="name filter" />
+	<param name="uniquename" label="Uniquename" argument="uniquename" type="text" help="uniquename filter" />
+
+	</inputs>
+	<outputs>
+		<data format="json" name="results"/>
+	</outputs>
+	<help>
+Get all or some features
+
+@HELP@
+	</help>
+</tool>