Mercurial > repos > gga > chado_feature_get_features
diff feature_get_features.xml @ 0:1494f2f25439 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
| author | gga |
|---|---|
| date | Thu, 21 Jun 2018 08:46:03 -0400 |
| parents | |
| children | d3ffd510c98a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/feature_get_features.xml Thu Jun 21 08:46:03 2018 -0400 @@ -0,0 +1,53 @@ +<?xml version="1.0"?> +<tool id="feature_get_features" name="Chado features get" version="@WRAPPER_VERSION@.0"> + <description></description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <code file="chado.py"/> + <command detect_errors="aggressive"><![CDATA[ +@AUTH@ + +chakin feature get_features + +#if $organism: + --organism_id '$organism' +#end if +#if $analysis_id: + --analysis_id '$analysis_id' +#end if +#if $name: + --name '$name' +#end if +#if $uniquename: + --uniquename '$uniquename' +#end if + +| jq -S . > $results + ]]></command> + <inputs> + <!-- arguments --> + + <!-- options --> + <param argument="--organism" + type="select" + dynamic_options="list_organisms()" + label="Organism" /> + <param argument="--analysis_id" + type="select" + dynamic_options="list_analyses()" + label="Analysis" /> + <param name="name" label="Name" argument="name" type="text" help="name filter" /> + <param name="uniquename" label="Uniquename" argument="uniquename" type="text" help="uniquename filter" /> + + </inputs> + <outputs> + <data format="json" name="results"/> + </outputs> + <help> +Get all or some features + +@HELP@ + </help> +</tool>