Mercurial > repos > gga > chado_feature_get_features
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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author | gga |
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date | Thu, 21 Jun 2018 08:46:03 -0400 |
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Galaxy-chado ============= Galaxy tools to interface with Tripal using python-chado Dependencies ------------ You will need to install some python modules in the Galaxy virtualenv for these tools to be fully functional: .. code:: bash . /path/to/galaxy/.venv/bin/activate pip install future chado deactivate Environment ----------- The following environment variables must be set: +--------------------------------+-----------------------------------------------------------+ | ENV | Use | +================================+===========================================================+ | ``$GALAXY_CHADO_DBHOST`` | Host of the Chado database | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_CHADO_DBNAME`` | Name of the Chado database | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_CHADO_DBUSER`` | Username to connect to the database | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_CHADO_DBPASS`` | Password to connect to the database | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_CHADO_DBSCHEMA`` | Database schema. | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_CHADO_DBPORT`` | Port of the Chado database | +--------------------------------+-----------------------------------------------------------+ License ------- All python scripts and wrappers are licensed under MIT license.