Mercurial > repos > gga > chado_feature_get_features
view feature_get_features.xml @ 10:7028154f9c93 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author | gga |
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date | Mon, 08 Jul 2019 05:39:06 -0400 |
parents | 51f5137232ff |
children | 95221c68838f |
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<?xml version="1.0"?> <tool id="feature_get_features" name="Chado features get" version="@WRAPPER_VERSION@.0"> <description></description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <code file="chado.py"/> <command detect_errors="aggressive"><![CDATA[ @START_PSQL@ && chakin feature get_features #if $organism: --organism_id '$organism' #end if #if $analysis_id: --analysis_id '$analysis_id' #end if #if $name: --name '$name' #end if #if $uniquename: --uniquename '$uniquename' #end if | jq -S . > '$results' && @STOP_PSQL@ ]]></command> <inputs> <expand macro="psql_target"/> <!-- options --> <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" /> <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> <param name="name" label="Name" argument="--name" type="text" help="name filter" /> <param name="uniquename" label="Uniquename" argument="--uniquename" type="text" help="uniquename filter" /> </inputs> <outputs> <data format="json" name="results"/> </outputs> <help> Get all or some features @HELP@ </help> </tool>