Mercurial > repos > gga > chado_feature_load_fasta
diff feature_load_fasta.xml @ 12:5a1a37db2784 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author | gga |
---|---|
date | Mon, 08 Jul 2019 05:30:24 -0400 |
parents | 9e309f028169 |
children | 313a27d7d64a |
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--- a/feature_load_fasta.xml Tue Mar 05 05:11:49 2019 -0500 +++ b/feature_load_fasta.xml Mon Jul 08 05:30:24 2019 -0400 @@ -7,7 +7,7 @@ <expand macro="requirements"/> <code file="chado.py"/> <command detect_errors="aggressive"><![CDATA[ -@AUTH@ +@START_PSQL@ && chakin feature load_fasta '$fasta' @@ -44,8 +44,11 @@ #end if | jq -S . > '$results' + +&& @ZIP_PSQL@ ]]></command> <inputs> + <expand macro="psql_target"/> <!-- arguments --> <param name="fasta" label="Fasta" argument="fasta" type="data" format="fasta" help="Path to the Fasta file to load" /> <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" /> @@ -90,6 +93,9 @@ </inputs> <outputs> <data format="json" name="results"/> + <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}"> + <filter>psql_target['method'] == "pgtools"</filter> + </data> </outputs> <help> Load features from a fasta file