Mercurial > repos > gga > chado_feature_load_fasta
changeset 6:0e2c2d7d080f draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit a1460ea4dbbd5c6ff6576b2d6db8aaa04b0061a7
| author | gga |
|---|---|
| date | Tue, 04 Sep 2018 12:21:09 -0400 |
| parents | 5b482826e065 |
| children | c768f590d1d8 |
| files | feature_load_fasta.xml |
| diffstat | 1 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/feature_load_fasta.xml Fri Aug 31 02:59:35 2018 -0400 +++ b/feature_load_fasta.xml Tue Sep 04 12:21:09 2018 -0400 @@ -25,11 +25,10 @@ #if $re_uniquename: --re_uniquename '$re_uniquename' #end if -#if $match_on_name: - $match_on_name -#end if -$update +$match_on_name + +$do_update #if $ext_db.db: --db '${ext_db.db}' @@ -64,7 +63,7 @@ <param name="re_name" label="Name regular expression" argument="re_name" type="text" help="Regular expression to extract the feature name from the fasta sequence id (first capturing group will be used)." optional="true" /> <param name="re_uniquename" label="Uniquename regular expression" argument="re_uniquename" type="text" help="Regular expression to extract the feature name from the fasta sequence id (first capturing group will be used)." optional="true" /> <param name="match_on_name" label="Match on name" argument="match_on_name" type="boolean" truevalue="--match_on_name" falsevalue="" help="Match existing features using their name instead of their uniquename" /> - <param name="update" label="Update" argument="update" type="boolean" truevalue="--update" falsevalue="" help="Update existing feature with new sequence instead of throwing an error" /> + <param name="do_update" label="Update" argument="update" type="boolean" truevalue="--update" falsevalue="" help="Update existing feature with new sequence instead of throwing an error" /> <conditional name="relationships"> <param name="rel_type" argument="--rel_type"