Mercurial > repos > gga > chado_feature_load_featureprops
diff feature_load_featureprops.xml @ 8:402032cb55a1 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author | gga |
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date | Fri, 23 Nov 2018 11:08:02 -0500 |
parents | 1f90fb200b4d |
children | 46b3ccaa24ca |
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--- a/feature_load_featureprops.xml Mon Nov 05 12:15:55 2018 -0500 +++ b/feature_load_featureprops.xml Fri Nov 23 11:08:02 2018 -0500 @@ -1,12 +1,12 @@ <?xml version="1.0"?> <tool id="feature_load_featureprops" name="Chado load feature properties" version="@WRAPPER_VERSION@.0"> - <description></description> - <macros> - <import>macros.xml</import> - </macros> - <expand macro="requirements"/> + <description></description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> <code file="chado.py"/> - <command detect_errors="aggressive"><![CDATA[ + <command detect_errors="aggressive"><![CDATA[ @AUTH@ chakin feature load_featureprops @@ -23,32 +23,26 @@ | jq -S . > $results ]]></command> - <inputs> + <inputs> <!-- arguments --> - <param name="tab_file" label="Tab File" argument="tab_file" type="data" format="tabular" help="Path to the tabular file to load" /> - <param argument="--analysis_id" - type="select" - dynamic_options="list_analyses()" - label="Analysis" /> - <param argument="--organism" - type="select" - dynamic_options="list_organisms()" - label="Organism" /> - <param name="prop_type" label="Property type" argument="prop_type" type="text" help="Type of the feature property (cvterm will be created if it doesn't exist)" /> + <param name="tab_file" label="Tab File" argument="tab_file" type="data" format="tabular" help="Path to the tabular file to load" /> + <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> + <param argument="organism" type="select" dynamic_options="list_organisms()" label="Organism" /> + <param name="prop_type" label="Property type" argument="prop_type" type="text" help="Type of the feature property (cvterm will be created if it doesn't exist)" /> <!-- options --> - <param name="feature_type" label="Feature type" argument="feature_type" type="text" help="Type of the target features in sequence ontology (will speed up loading if specified)" optional="true" /> - <param name="match_on_name" label="Match on name" argument="match_on_name" type="boolean" truevalue="--match_on_name" falsevalue="" help="Match features using their name instead of their uniquename" /> + <param name="feature_type" label="Feature type" argument="--feature_type" type="text" help="Type of the target features in sequence ontology (will speed up loading if specified)" optional="true" /> + <param name="match_on_name" label="Match on name" argument="--match_on_name" type="boolean" truevalue="--match_on_name" falsevalue="" help="Match features using their name instead of their uniquename" /> <expand macro="wait_for"/> - </inputs> - <outputs> - <data format="json" name="results"/> - </outputs> - <help> + </inputs> + <outputs> + <data format="json" name="results"/> + </outputs> + <help> Load feature properties from a tabular file (Column1: feature name or uniquename, Column2: property value) @HELP@ - </help> + </help> </tool>