Mercurial > repos > gga > chado_organism_delete_all_organisms
view prepare_psql.sh @ 15:b73142c43004 draft
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 7bf18c69becc57152efdadedf7ebd0bcfa382a15"
author | gga |
---|---|
date | Mon, 29 Jun 2020 09:27:59 -0400 |
parents | 0e5b44c358d1 |
children |
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#!/bin/bash export PWD=`pwd` && sed -i.bak "s|unix_socket_directories.*|unix_socket_directories = '$PWD/postgresql/'|" ./postgresql/db/postgresql.conf && pglite start -d ./postgresql && timeout 60 bash -c 'until pglite status -d ./postgresql | grep -F -q "server is running"; do sleep 1; done' && pglite status -d ./postgresql && timeout 60 bash -c 'until ls -la ./postgresql | grep -F -q ".s.PGSQL.5432"; do sleep 1; done' && pglite status -d ./postgresql && echo "__default: local" > '.auth.yml' && echo "local:" >> '.auth.yml' && echo " dbhost: \"xxx\"" >> '.auth.yml' && echo " dbname: \"xxx\"" >> '.auth.yml' && echo " dbpass: \"xxx\"" >> '.auth.yml' && echo " dbuser: \"xxx\"" >> '.auth.yml' && echo " dbschema: \"$1\"" >> '.auth.yml' && echo " dbport: \"xxx\"" >> '.auth.yml' && echo " dburl: \"$(pglite url -d ./postgresql)\"" >> '.auth.yml' && export CHAKIN_GLOBAL_CONFIG_PATH='.auth.yml'