Mercurial > repos > gga > chado_organism_delete_organisms
view organism_delete_organism.xml @ 13:72edb0040b36 draft
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit bfca9a8c38694bbf04d92a6668e4ea31cf658eb8"
author | gga |
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date | Thu, 14 Nov 2019 09:55:54 -0500 |
parents | 80dc4a25db97 |
children |
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<?xml version="1.0"?> <tool id="organism_delete_organisms" name="Chado organism delete" version="@WRAPPER_VERSION@"> <description></description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <code file="chado.py"/> <command detect_errors="aggressive"><![CDATA[ @START_PSQL@ && chakin organism delete_organisms --organism_id $organism > '$results' @ZIP_PSQL@ ]]></command> <inputs> <expand macro="psql_target"/> <!-- arguments --> <!-- options --> <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" /> </inputs> <outputs> <data format="txt" name="results"/> <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}"> <filter>psql_target['method'] == "pgtools"</filter> </data> </outputs> <help> Delete all organisms @HELP@ </help> </tool>