Mercurial > repos > gga > chado_organism_get_organisms
comparison organism_get_organisms.xml @ 0:1ce80eabf7eb draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author | gga |
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date | Thu, 21 Jun 2018 08:45:28 -0400 |
parents | |
children | 05e1fd17832b |
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-1:000000000000 | 0:1ce80eabf7eb |
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1 <?xml version="1.0"?> | |
2 <tool id="organism_get_organisms" name="Chado organism get" version="@WRAPPER_VERSION@.0"> | |
3 <description></description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements"/> | |
8 <command detect_errors="aggressive"><![CDATA[ | |
9 @AUTH@ | |
10 | |
11 chakin organism get_organisms | |
12 | |
13 #if $organism_id: | |
14 --organism_id '$organism_id' | |
15 #end if | |
16 #if $genus: | |
17 --genus '$genus' | |
18 #end if | |
19 #if $species: | |
20 --species '$species' | |
21 #end if | |
22 #if $common: | |
23 --common '$common' | |
24 #end if | |
25 #if $abbr: | |
26 --abbr '$abbr' | |
27 #end if | |
28 #if $comment: | |
29 --comment '$comment' | |
30 #end if | |
31 | |
32 | jq -S . > $results | |
33 ]]></command> | |
34 <inputs> | |
35 <!-- arguments --> | |
36 | |
37 <!-- options --> | |
38 <param name="organism_id" label="Organism Id" argument="organism_id" type="integer" help="organism_id filter" optional="True" /> | |
39 <param name="genus" label="Genus" argument="genus" type="text" help="genus filter" optional="True" /> | |
40 <param name="species" label="Species" argument="species" type="text" help="species filter" optional="True" /> | |
41 <param name="common" label="Common" argument="common" type="text" help="common filter" optional="True" /> | |
42 <param name="abbr" label="Abbr" argument="abbr" type="text" help="abbr filter" optional="True" /> | |
43 <param name="comment" label="Comment" argument="comment" type="text" help="comment filter" optional="True" /> | |
44 | |
45 </inputs> | |
46 <outputs> | |
47 <data format="json" name="results"/> | |
48 </outputs> | |
49 <help> | |
50 Get all or some organisms | |
51 | |
52 @HELP@ | |
53 </help> | |
54 </tool> |