Mercurial > repos > gga > chado_phylogeny_gene_families

annotate phylogeny_gene_families.xml @ 0:e2a554c9ab8b draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author gga
date Thu, 21 Jun 2018 08:45:08 -0400
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1 <?xml version="1.0"?>
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2 <tool id="phylogeny_gene_families" name="Chado refresh gene families" version="@WRAPPER_VERSION@.0">
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3 <description>for phylogeny module</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <command detect_errors="aggressive"><![CDATA[
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9 @AUTH@
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10
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11 chakin phylogeny gene_families
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12
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13 #if $family_name:
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14 --family_name '$family_name'
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15 #end if
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16 #if $nuke:
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17 $nuke
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18 #end if
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19
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20 > $results
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21 ]]></command>
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22 <inputs>
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23 <!-- options -->
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24 <param name="family_name" label="Family Name" argument="family_name" type="text" help="Restrict to families beginning with given prefix" />
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25 <param name="nuke" label="Nuke" argument="nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene families data" />
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26 <expand macro="wait_for"/>
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27
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28 </inputs>
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29 <outputs>
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30 <data format="txt" name="results"/>
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31 </outputs>
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32 <help>
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33 Adds an entry in the featureprop table in a chado database for each family a gene belongs to (for use in https://github.com/legumeinfo/lis_context_viewer/).
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34
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35 @HELP@
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36 </help>
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37 </tool>