Mercurial > repos > gga > chado_phylogeny_gene_families

comparison phylogeny_gene_families.xml @ 11:cb4cee85202a draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:37:56 -0400
parents f8d27e79e363
children b9fd06875714
comparison
equal deleted inserted replaced
10:f8d27e79e363 11:cb4cee85202a
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 @AUTH@ 9 @START_PSQL@ &&
10 10
11 chakin phylogeny gene_families 11 chakin phylogeny gene_families
12 12
13 #if $family_name: 13 #if $family_name:
14 --family_name '$family_name' 14 --family_name '$family_name'
15 #end if 15 #end if
16 16
17 $nuke 17 $nuke
18 18
19 > '$results' 19 > '$results'
20
21 && @ZIP_PSQL@
20 ]]></command> 22 ]]></command>
21 <inputs> 23 <inputs>
22 <!-- options --> 24 <expand macro="psql_target"/>
25 <!-- options -->
23 <param name="family_name" label="Family Name" argument="--family_name" type="text" help="Restrict to families beginning with given prefix" /> 26 <param name="family_name" label="Family Name" argument="--family_name" type="text" help="Restrict to families beginning with given prefix" />
24 <param name="nuke" label="Nuke" argument="--nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene families data" /> 27 <param name="nuke" label="Nuke" argument="--nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene families data" />
25 <expand macro="wait_for"/> 28 <expand macro="wait_for"/>
26 29
27 </inputs> 30 </inputs>
28 <outputs> 31 <outputs>
29 <data format="txt" name="results"/> 32 <data format="txt" name="results"/>
33 <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
34 <filter>psql_target['method'] == "pgtools"</filter>
35 </data>
30 </outputs> 36 </outputs>
31 <help> 37 <help>
32 Adds an entry in the featureprop table in a chado database for each family a gene belongs to (for use in https://github.com/legumeinfo/lis_context_viewer/). 38 Adds an entry in the featureprop table in a chado database for each family a gene belongs to (for use in https://github.com/legumeinfo/lis_context_viewer/).
33 39
34 @HELP@ 40 @HELP@