Mercurial > repos > gga > chado_phylogeny_gene_families
comparison phylogeny_gene_families.xml @ 0:e2a554c9ab8b draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
| author | gga |
|---|---|
| date | Thu, 21 Jun 2018 08:45:08 -0400 |
| parents | |
| children | f19536c7250e |
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| -1:000000000000 | 0:e2a554c9ab8b |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="phylogeny_gene_families" name="Chado refresh gene families" version="@WRAPPER_VERSION@.0"> | |
| 3 <description>for phylogeny module</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"/> | |
| 8 <command detect_errors="aggressive"><![CDATA[ | |
| 9 @AUTH@ | |
| 10 | |
| 11 chakin phylogeny gene_families | |
| 12 | |
| 13 #if $family_name: | |
| 14 --family_name '$family_name' | |
| 15 #end if | |
| 16 #if $nuke: | |
| 17 $nuke | |
| 18 #end if | |
| 19 | |
| 20 > $results | |
| 21 ]]></command> | |
| 22 <inputs> | |
| 23 <!-- options --> | |
| 24 <param name="family_name" label="Family Name" argument="family_name" type="text" help="Restrict to families beginning with given prefix" /> | |
| 25 <param name="nuke" label="Nuke" argument="nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene families data" /> | |
| 26 <expand macro="wait_for"/> | |
| 27 | |
| 28 </inputs> | |
| 29 <outputs> | |
| 30 <data format="txt" name="results"/> | |
| 31 </outputs> | |
| 32 <help> | |
| 33 Adds an entry in the featureprop table in a chado database for each family a gene belongs to (for use in https://github.com/legumeinfo/lis_context_viewer/). | |
| 34 | |
| 35 @HELP@ | |
| 36 </help> | |
| 37 </tool> |