Mercurial > repos > gga > chado_phylogeny_gene_families
diff phylogeny_gene_families.xml @ 0:e2a554c9ab8b draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
| author | gga |
|---|---|
| date | Thu, 21 Jun 2018 08:45:08 -0400 |
| parents | |
| children | f19536c7250e |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/phylogeny_gene_families.xml Thu Jun 21 08:45:08 2018 -0400 @@ -0,0 +1,37 @@ +<?xml version="1.0"?> +<tool id="phylogeny_gene_families" name="Chado refresh gene families" version="@WRAPPER_VERSION@.0"> + <description>for phylogeny module</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <command detect_errors="aggressive"><![CDATA[ +@AUTH@ + +chakin phylogeny gene_families + +#if $family_name: + --family_name '$family_name' +#end if +#if $nuke: + $nuke +#end if + + > $results + ]]></command> + <inputs> + <!-- options --> + <param name="family_name" label="Family Name" argument="family_name" type="text" help="Restrict to families beginning with given prefix" /> + <param name="nuke" label="Nuke" argument="nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene families data" /> + <expand macro="wait_for"/> + + </inputs> + <outputs> + <data format="txt" name="results"/> + </outputs> + <help> +Adds an entry in the featureprop table in a chado database for each family a gene belongs to (for use in https://github.com/legumeinfo/lis_context_viewer/). + +@HELP@ + </help> +</tool>