Mercurial > repos > gga > chado_phylogeny_gene_families
view phylogeny_gene_families.xml @ 20:33a839914d79 draft
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit fa25d58f87bfe8b12dc9a497c08855ee5d8ff641"
author | gga |
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date | Thu, 24 Jun 2021 09:08:31 +0000 |
parents | 1383275a8210 |
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<?xml version="1.0"?> <tool id="phylogeny_gene_families" name="Chado refresh gene families" version="@WRAPPER_VERSION@"> <description>for phylogeny module</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ @START_PSQL@ && chakin phylogeny gene_families #if $family_name: --family_name '$family_name' #end if $nuke > '$results' @ZIP_PSQL@ ]]></command> <inputs> <expand macro="psql_target"/> <!-- options --> <param name="family_name" label="Family Name" argument="--family_name" type="text" help="Restrict to families beginning with given prefix" /> <param name="nuke" label="Nuke" argument="--nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene families data" /> <expand macro="wait_for"/> </inputs> <outputs> <data format="txt" name="results"/> <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}"> <filter>psql_target['method'] == "pgtools"</filter> </data> </outputs> <help> Adds an entry in the featureprop table in a chado database for each family a gene belongs to (for use in https://github.com/legumeinfo/lis_context_viewer/). @HELP@ </help> </tool>