Mercurial > repos > gga > chado_phylogeny_gene_families
view phylogeny_gene_families.xml @ 3:ddfb6169e6db draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 69b7ab8c4cc29de3cca36e7f0a365962ef0e8509
author | gga |
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date | Fri, 03 Aug 2018 04:35:45 -0400 |
parents | e2a554c9ab8b |
children | f19536c7250e |
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<?xml version="1.0"?> <tool id="phylogeny_gene_families" name="Chado refresh gene families" version="@WRAPPER_VERSION@.0"> <description>for phylogeny module</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ @AUTH@ chakin phylogeny gene_families #if $family_name: --family_name '$family_name' #end if #if $nuke: $nuke #end if > $results ]]></command> <inputs> <!-- options --> <param name="family_name" label="Family Name" argument="family_name" type="text" help="Restrict to families beginning with given prefix" /> <param name="nuke" label="Nuke" argument="nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene families data" /> <expand macro="wait_for"/> </inputs> <outputs> <data format="txt" name="results"/> </outputs> <help> Adds an entry in the featureprop table in a chado database for each family a gene belongs to (for use in https://github.com/legumeinfo/lis_context_viewer/). @HELP@ </help> </tool>