Mercurial > repos > gga > chado_phylogeny_gene_order
diff phylogeny_gene_order.xml @ 11:9efb6d4ed19b draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
| author | gga |
|---|---|
| date | Mon, 08 Jul 2019 05:31:09 -0400 |
| parents | cba2274d1463 |
| children | bb4b8932ccdc |
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--- a/phylogeny_gene_order.xml Tue Mar 05 05:12:06 2019 -0500 +++ b/phylogeny_gene_order.xml Mon Jul 08 05:31:09 2019 -0400 @@ -6,15 +6,18 @@ </macros> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ -@AUTH@ +@START_PSQL@ && chakin phylogeny gene_order $nuke > '$results' + + && @ZIP_PSQL@ ]]></command> <inputs> + <expand macro="psql_target"/> <!-- options --> <param name="nuke" label="Nuke" argument="--nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene ordering data" /> <expand macro="wait_for"/> @@ -22,6 +25,9 @@ </inputs> <outputs> <data format="txt" name="results"/> + <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}"> + <filter>psql_target['method'] == "pgtools"</filter> + </data> </outputs> <help> Orders all the genes in the database by their order on their respective chromosomes in the gene_order table (for use in https://github.com/legumeinfo/lis_context_viewer/).