Mercurial > repos > gga > chado_phylogeny_load_tree
diff phylogeny_load_tree.xml @ 12:4812a8770a8c draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 703eb9ed2bdf6380db14c0af6a7cb1a85fab6d3f
| author | gga |
|---|---|
| date | Wed, 27 Mar 2019 17:32:01 -0400 |
| parents | 8f3b6bb4c05c |
| children | 8d44d72730ed |
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--- a/phylogeny_load_tree.xml Tue Mar 05 05:12:24 2019 -0500 +++ b/phylogeny_load_tree.xml Wed Mar 27 17:32:01 2019 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="phylogeny_load_tree" name="Chado load trees" version="@WRAPPER_VERSION@.0"> +<tool id="phylogeny_load_tree" name="Chado load trees" version="@WRAPPER_VERSION@.1"> <description>for phylogeny module</description> <macros> <import>macros.xml</import> @@ -7,13 +7,13 @@ <expand macro="requirements"/> <code file="chado.py"/> <command detect_errors="aggressive"><![CDATA[ -@AUTH@ - #if $input.input_type == "archive": mkdir 'newick_arch/' && tar -C 'newick_arch/' -xzvf '${input.newick_arch}' > /dev/null && #end if +@AUTH@ + chakin phylogeny load_tree $match_on_name @@ -26,7 +26,7 @@ --xref_db '$xref_db' #end if -#if $input.input_type == "archive": +#if $input.input_type == "file": #if $name: --name '$name' #end if @@ -40,9 +40,7 @@ 'newick_arch/' #end if -'$analysis_id' - -| jq -S . > '$results' +'$analysis_id' > '$results' ]]></command> <inputs> <param argument="analysis_id" @@ -73,7 +71,7 @@ </inputs> <outputs> - <data format="json" name="results"/> + <data format="txt" name="results"/> </outputs> <help> Load a phylogenetic tree (Newick format) into Chado db