# HG changeset patch
# User gga
# Date 1752584989 0
# Node ID eae124b1e1f1e0879d7b1e691fcfd0948617bb42
# Parent  23effb1dfe1abfea91d75915c817b5b541af8091
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 27cd61679954c8a70075dbc190e3f246b0b6c7f4

diff -r 23effb1dfe1a -r eae124b1e1f1 launch_gnb.sh
--- a/launch_gnb.sh	Mon Jun 23 10:56:52 2025 +0000
+++ b/launch_gnb.sh	Tue Jul 15 13:09:49 2025 +0000
@@ -12,12 +12,12 @@
 
 tries=0
 
-# "Listening on" is for mongodb 5x
+# "Listening on" is for mongodb 150x
 while ! grep -q "Listening on" ./mongod.log; do
 
   tries=$((tries + 1))
 
-  if [ "$tries" -ge 50 ]; then
+  if [ "$tries" -ge 150 ]; then
     echo "Failed to launch MongoDB:" 1>&2;
     cat ./mongod.log 1>&2;
     exit 1;
@@ -49,7 +49,7 @@
   tries_gnb=$((tries_gnb + 1))
 
   # GNB can take a while to start depending on storage (accessing many many small js files)
-  if [ "$tries_gnb" -ge 150 ]; then
+  if [ "$tries_gnb" -ge 250 ]; then
     echo "Failed to launch GeneNoteBook:" 1>&2;
     cat ./gnb.log 1>&2;
     kill $GNB_PID $(<"./mongo.pid");
@@ -66,7 +66,7 @@
 
 while ! curl -s "http://127.0.0.1:${GNB_PORT}/healthcheck"; do
   tries_curl=$((tries_curl + 1))
-  if [ "$tries_curl" -ge 100 ]; then
+  if [ "$tries_curl" -ge 200 ]; then
     echo "Healthcheck is not working, stopping:" 1>&2;
     cat ./gnb.log 1>&2;
     kill $GNB_PID $(<"./mongo.pid");
@@ -78,4 +78,6 @@
 
 grep -q "Healthcheck OK" ./gnb.log
 
-echo "GNB is ready"
+sleep 30
+
+echo "GNB is ready"
\ No newline at end of file
diff -r 23effb1dfe1a -r eae124b1e1f1 macros.xml
--- a/macros.xml	Mon Jun 23 10:56:52 2025 +0000
+++ b/macros.xml	Tue Jul 15 13:09:49 2025 +0000
@@ -7,7 +7,7 @@
         </requirements>
     </xml>
 
-    <token name="@TOOL_VERSION@">0.4.17</token>
+    <token name="@TOOL_VERSION@">0.4.18</token>
     <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy0</token>
 
     <xml name="citation">