Mercurial > repos > gga > tripal_analysis_add_analysis
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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
author | gga |
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date | Mon, 25 Feb 2019 06:33:29 -0500 |
parents | ab0942a9ae18 |
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Galaxy-tripal ============= Galaxy tools to interface with Tripal using python-tripal Dependencies ------------ You will need to install some python modules in the Galaxy virtualenv for these tools to be fully functional: .. code:: bash . /path/to/galaxy/.venv/bin/activate pip install future tripal deactivate Environment ----------- The following environment variables must be set: +--------------------------------+-----------------------------------------------------------+ | ENV | Use | +================================+===========================================================+ | ``$GALAXY_TRIPAL_URL`` | The URL at which Tripal is accessible, internal to Galaxy | | | and where the tools run. Must be absolute, with FQDN and | | | protocol. | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_TRIPAL_USER`` | The admin user which Galaxy should use to talk to Tripal. | | | | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_TRIPAL_PASSWORD`` | The password for the admin user. | | | | | | | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_TRIPAL_SHARED_DIR`` | Directory shared between Galaxy and Tripal, used to | | | exchange data files. | +--------------------------------+-----------------------------------------------------------+ License ------- All python scripts and wrappers are licensed under MIT license.