Mercurial > repos > gga > tripal_analysis_load_go
changeset 6:8332cd93e77a draft default tip
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit ea279e5b47cf3d5767328d17b0e40e57b0238ea1"
| author | gga |
|---|---|
| date | Wed, 14 Aug 2019 10:01:39 -0400 |
| parents | 719b00f71132 |
| children | |
| files | macros.xml |
| diffstat | 1 files changed, 11 insertions(+), 9 deletions(-) [+] |
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--- a/macros.xml Tue Mar 05 05:19:47 2019 -0500 +++ b/macros.xml Wed Aug 14 10:01:39 2019 -0400 @@ -41,13 +41,15 @@ <token name="@DATA_DIR@">\$GALAXY_TRIPAL_SHARED_DIR</token> <token name="@AUTH@"><![CDATA[ - echo "__default: local" > '.auth.yml' && - echo "local:" >> '.auth.yml' && - echo " tripal_url: \"\$GALAXY_TRIPAL_URL\"" >> '.auth.yml' && - echo " username: \"\$GALAXY_TRIPAL_USER\"" >> '.auth.yml' && - echo " password: \"\$GALAXY_TRIPAL_PASSWORD\"" >> '.auth.yml' && + if [ -z "\$TRIPAILLE_GLOBAL_CONFIG_PATH" ]; then + echo "__default: local" > '.auth.yml' && + echo "local:" >> '.auth.yml' && + echo " tripal_url: \"\$GALAXY_TRIPAL_URL\"" >> '.auth.yml' && + echo " username: \"\$GALAXY_TRIPAL_USER\"" >> '.auth.yml' && + echo " password: \"\$GALAXY_TRIPAL_PASSWORD\"" >> '.auth.yml' && - TRIPAILLE_GLOBAL_CONFIG_PATH='.auth.yml' + export TRIPAILLE_GLOBAL_CONFIG_PATH='.auth.yml' + ; fi && ]]></token> <xml name="wait_for"> @@ -155,7 +157,7 @@ <section name="matching" title="Feature matching" expanded="True"> <param name="query_type" type="text" - label="The feature type of the blast query" + label="The feature type of the query" help="It must be a valid Sequence Ontology term. e.g. 'contig', 'gene', 'mRNA', 'polypeptide'" /> <param name="query_uniquename" @@ -163,13 +165,13 @@ checked="false" truevalue="--query_uniquename" falsevalue="" - label="Find blast query features using their Unique name" + label="Find query features using their Unique name" help="Feature name will be used otherwise" /> <param name="query_re" type="text" optional="true" - label="Regular expression to extract the feature name from the blast query name" + label="Regular expression to extract the feature name from the query name" help="leave empty if the first word in query name is sufficient"> <expand macro="sanitized"/> </param>