Mercurial > repos > gga > tripal_analysis_load_go

changeset 2:976020e5c924 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author gga
date Thu, 21 Jun 2018 08:47:37 -0400
parents f0d2f2324041
children 60d3281859a0
files README.rst analysis_load_go.xml macros.xml tripal.py
diffstat 4 files changed, 13 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/README.rst	Tue Sep 19 12:25:22 2017 -0400
+++ b/README.rst	Thu Jun 21 08:47:37 2018 -0400
@@ -1,7 +1,7 @@
 Galaxy-tripal
 =============
 
-Galaxy tools to interface with Tripal using pyhon-tripal
+Galaxy tools to interface with Tripal using python-tripal
 
 Dependencies
 ------------
@@ -42,5 +42,4 @@
 License
 -------
 
-All python scripts, wrappers, and the webapollo.py are licensed under
-MIT license.
+All python scripts and wrappers are licensed under MIT license.
--- a/analysis_load_go.xml	Tue Sep 19 12:25:22 2017 -0400
+++ b/analysis_load_go.xml	Thu Jun 21 08:47:37 2018 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="analysis_load_go" profile="16.04" name="Load Blast2GO results" version="@WRAPPER_VERSION@.0">
+<tool id="analysis_load_go" profile="16.04" name="Load Blast2GO results" version="@WRAPPER_VERSION@.1">
     <description>into Tripal</description>
     <macros>
         <import>macros.xml</import>
@@ -37,6 +37,7 @@
 
         <expand macro="matching"/>
         <expand macro="analysis" />
+        <expand macro="wait_for"/>
     </inputs>
     <outputs>
         <data format="txt" name="results" label="Load Blast2GO results into Tripal" />
--- a/macros.xml	Tue Sep 19 12:25:22 2017 -0400
+++ b/macros.xml	Thu Jun 21 08:47:37 2018 -0400
@@ -50,6 +50,15 @@
         TRIPAILLE_GLOBAL_CONFIG_PATH='.auth.yml'
     ]]></token>
 
+    <xml name="wait_for">
+        <param name="wait_for"
+               type="data"
+               format="data"
+               optional="true"
+               label="Run this only after the following dataset is ready"
+               help="Use this if you want to delay the job execution until some data is already loaded. The selected dataset will not be used for anything else."/>
+    </xml>
+
     <xml name="test_result">
         <assert_stderr>
             <has_text text="MissingSchema" />
--- a/tripal.py	Tue Sep 19 12:25:22 2017 -0400
+++ b/tripal.py	Thu Jun 21 08:47:37 2018 -0400
@@ -1,7 +1,6 @@
 import collections
 import os
 import time
-
 from abc import abstractmethod
 
 import tripal