Mercurial > repos > gga > tripal_db_index

comparison db_index.xml @ 6:468955e12255 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
author gga
date Tue, 05 Mar 2019 05:21:28 -0500
parents 1d109af32d7c
children d55a39f12dda
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5:1d109af32d7c 6:468955e12255
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="db_index" profile="16.04" name="Index Tripal data" version="@WRAPPER_VERSION@.1"> 2 <tool id="db_index" profile="16.04" name="Index Tripal data" version="@WRAPPER_VERSION@.0">
3 <description>using Elasticsearch</description> 3 <description>using Elasticsearch</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
43 --index_url '${expose.index_url}' 43 --index_url '${expose.index_url}'
44 #end if 44 #end if
45 45
46 && 46 &&
47 47
48 echo "Data loaded" > $results 48 echo "Data loaded" > '$results'
49 ]]></command> 49 ]]></command>
50 <inputs> 50 <inputs>
51 <conditional name="table"> 51 <conditional name="table">
52 <param name="mode" 52 <param name="mode"
53 argument="--mode"
53 type="select" 54 type="select"
54 label="Data to index"> 55 label="Data to index">
55 <option value="website" selected="true">Index all the Tripal content</option> 56 <option value="website" selected="true">Index all the Tripal content</option>
57 <option value="gene">Index all the genes</option>
56 <option value="table">Index a specific table</option> 58 <option value="table">Index a specific table</option>
57 <option value="nodes">Index all website nodes</option> 59 <option value="nodes">Index all website nodes</option>
58 <option value="entities">Index all website entities (Tripal 3 only)</option> 60 <option value="entities">Index all website entities (Tripal 3 only)</option>
59 </param> 61 </param>
60 <when value="website"/> 62 <when value="website"/>
119 <option value="path_hierarchy">path_hierarchy</option> 121 <option value="path_hierarchy">path_hierarchy</option>
120 </param> 122 </param>
121 <param name="queues" label="Queues" argument="queues" type="integer" value="10" help="Number of indexing task queues" /> 123 <param name="queues" label="Queues" argument="queues" type="integer" value="10" help="Number of indexing task queues" />
122 <conditional name="expose"> 124 <conditional name="expose">
123 <param name="do_expose" type="select" label="Expose the index to other websites (read-only)"> 125 <param name="do_expose" type="select" label="Expose the index to other websites (read-only)">
124 <option value="yes" selected="true">No</option> 126 <option value="yes" selected="true">Yes</option>
125 <option value="no">No</option> 127 <option value="no">No</option>
126 </param> 128 </param>
127 <when value="no"/> 129 <when value="no"/>
128 <when value="yes"> 130 <when value="yes">
129 <param name="index_url" label="Index Url" argument="--index_url" type="text" help="In order for other sites to link back to your results page, you must specify a path where the form for this index can be reached" /> 131 <param name="index_url" label="Index Url" argument="--index_url" type="text" help="In order for other sites to link back to your results page, you must specify a path where the form for this index can be reached" />