Mercurial > repos > gga > tripal_entity_publish

annotate entity_publish.xml @ 2:6367393cae8e draft default tip

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit ea279e5b47cf3d5767328d17b0e40e57b0238ea1"
author gga
date Wed, 14 Aug 2019 10:03:19 -0400
parents cf07e70c1502
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fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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1 <?xml version="1.0"?>
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6367393cae8e "planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit ea279e5b47cf3d5767328d17b0e40e57b0238ea1"
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2 <tool id="entity_publish" name="Publish entities" version="@WRAPPER_VERSION@.1">
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fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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3 <description>in Tripal</description>
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4 <macros>
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5 <import>macros.xml</import>
fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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6 </macros>
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7 <expand macro="requirements"/>
fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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8 <command detect_errors="aggressive"><![CDATA[
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cf07e70c1502 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
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10 @AUTH@
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cf07e70c1502 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
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12 tripaille entity publish
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fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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13
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cf07e70c1502 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
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14 #for $rep in $repeat_types:
cf07e70c1502 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
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15 --types '$rep.types'
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16 #end for
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fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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17
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18 &&
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cf07e70c1502 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
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20 echo "Data loaded" > '$results'
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fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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21 ]]></command>
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22 <inputs>
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23 <!-- arguments -->
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fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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25 <!-- options -->
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26 <repeat name="repeat_types" title="types">
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27 <param name="types" label="Types" argument="types" type="text" help="List of entity types to be published (e.g. Gene mRNA, default: all)" />
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28 </repeat>
fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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29
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30 <expand macro="wait_for"/>
6367393cae8e "planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit ea279e5b47cf3d5767328d17b0e40e57b0238ea1"
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31
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32 </inputs>
fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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33 <outputs>
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34 <data format="json" name="results"/>
fd775ed5c129 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
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35 </outputs>
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36 <help>
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37 Publish entities (Tripal 3 only)
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39 @HELP@
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40 </help>
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41 </tool>