Mercurial > repos > gga > tripal_entity_publish
comparison entity_publish.xml @ 0:fd775ed5c129 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
| author | gga |
|---|---|
| date | Mon, 25 Feb 2019 06:31:21 -0500 |
| parents | |
| children | cf07e70c1502 |
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| -1:000000000000 | 0:fd775ed5c129 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="entity_publish" name="Publish entities" version="@WRAPPER_VERSION@.0"> | |
| 3 <description>in Tripal</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"/> | |
| 8 <command detect_errors="aggressive"><![CDATA[ | |
| 9 tripaille entity publish | |
| 10 | |
| 11 #for $rep in $repeat_types: | |
| 12 --types '$rep.types' | |
| 13 #end for | |
| 14 | |
| 15 | jq -S . > $results | |
| 16 ]]></command> | |
| 17 <inputs> | |
| 18 <!-- arguments --> | |
| 19 | |
| 20 <!-- options --> | |
| 21 <repeat name="repeat_types" title="types"> | |
| 22 <param name="types" label="Types" argument="types" type="text" help="List of entity types to be published (e.g. Gene mRNA, default: all)" /> | |
| 23 </repeat> | |
| 24 | |
| 25 </inputs> | |
| 26 <outputs> | |
| 27 <data format="json" name="results"/> | |
| 28 </outputs> | |
| 29 <help> | |
| 30 Publish entities (Tripal 3 only) | |
| 31 | |
| 32 @HELP@ | |
| 33 </help> | |
| 34 </tool> |