Mercurial > repos > gga > tripal_expression_add_biomaterial
view expression_add_biomaterial.xml @ 1:4843796fcbf6 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
author | gga |
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date | Tue, 05 Mar 2019 05:24:55 -0500 |
parents | 11ec43bed5ea |
children | 5e02721168e9 |
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<?xml version="1.0"?> <tool id="expression_add_biomaterial" name="Create a biomaterial" version="@WRAPPER_VERSION@.0"> <description>in Tripal</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <code file="tripal.py"/> <command detect_errors="aggressive"><![CDATA[ tmp_dir=`mktemp -d -p "@DATA_DIR@"` && chmod a+rx "\${tmp_dir}" && cp '${file_path}' "\${tmp_dir}/biomaterial_input" && @AUTH@ tripaille expression add_biomaterial '$organism_id' "\${tmp_dir}/biomaterial_input" '$file_path.extension' && echo "Data loaded" > '$results' ]]></command> <inputs> <!-- arguments --> <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" /> <param name="file_path" label="Biomaterial description sheet" argument="file_path" type="data" format="xml,tsv,csv" help="A file describing the biomaterial" /> </inputs> <outputs> <data format="txt" name="results"/> </outputs> <help> Add a new biomaterial to the database @HELP@ </help> </tool>