Mercurial > repos > gga > tripal_organism_add_organism

comparison test-data/blast.xml @ 0:56390a41953e draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
author gga
date Mon, 11 Sep 2017 05:53:37 -0400
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-1:000000000000 0:56390a41953e
1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3 <BlastOutput>
4 <BlastOutput_program>blastx</BlastOutput_program>
5 <BlastOutput_version>blastx 2.2.25 [Feb-01-2011]</BlastOutput_version>
6 <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~&quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7 <BlastOutput_db>/scratch/mainlab/data/lib/nr</BlastOutput_db>
8 <BlastOutput_query-ID>lcl|1_0</BlastOutput_query-ID>
9 <BlastOutput_query-def>orange1.1g015632m PAC:18136217 (mRNA) Citrus sinensis</BlastOutput_query-def>
10 <BlastOutput_query-len>2075</BlastOutput_query-len>
11 <BlastOutput_param>
12 <Parameters>
13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
14 <Parameters_expect>1e-06</Parameters_expect>
15 <Parameters_gap-open>11</Parameters_gap-open>
16 <Parameters_gap-extend>1</Parameters_gap-extend>
17 <Parameters_filter>F</Parameters_filter>
18 </Parameters>
19 </BlastOutput_param>
20 <BlastOutput_iterations>
21 <Iteration>
22 <Iteration_iter-num>1</Iteration_iter-num>
23 <Iteration_query-ID>lcl|1_0</Iteration_query-ID>
24 <Iteration_query-def>orange1.1g015632m PAC:18136217 (mRNA) Citrus sinensis</Iteration_query-def>
25 <Iteration_query-len>2075</Iteration_query-len>
26 <Iteration_hits>
27 <Hit>
28 <Hit_num>1</Hit_num>
29 <Hit_id>gi|224068663|ref|XP_002302794.1|</Hit_id>
30 <Hit_def>predicted protein [Populus trichocarpa] &gt;gi|222844520|gb|EEE82067.1| predicted protein [Populus trichocarpa]</Hit_def>
31 <Hit_accession>XP_002302794</Hit_accession>
32 <Hit_len>409</Hit_len>
33 <Hit_hsps>
34 <Hsp>
35 <Hsp_num>1</Hsp_num>
36 <Hsp_bit-score>792.727</Hsp_bit-score>
37 <Hsp_score>2046</Hsp_score>
38 <Hsp_evalue>0</Hsp_evalue>
39 <Hsp_query-from>559</Hsp_query-from>
40 <Hsp_query-to>1767</Hsp_query-to>
41 <Hsp_hit-from>1</Hsp_hit-from>
42 <Hsp_hit-to>409</Hsp_hit-to>
43 <Hsp_query-frame>1</Hsp_query-frame>
44 <Hsp_identity>387</Hsp_identity>
45 <Hsp_positive>394</Hsp_positive>
46 <Hsp_gaps>6</Hsp_gaps>
47 <Hsp_align-len>409</Hsp_align-len>
48 <Hsp_qseq>MASVSVVPASG------NTVGVDRLPEEMNDMKIRDDKEMEATVVDGNGTEAGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHHYKMSQRMPLIYVKLYFYQICRALAYIHNTIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFQKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPFFDELRDPNTRLPNGRFLPPLFNFKPHELKGVPVDMLVKLIPEHARKQCAFLGL</Hsp_qseq>
49 <Hsp_hseq>MASVSVVPASGLRDTLGNTTGVDKLPEEMNDMKISDDKEMEAAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGLVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETIHRVIKHYYKMSQRMPLIYVKLYFYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPFFDELRDPNARLPNGRILPPLFNFKPHELKGVPVEMLVKLIPEHARKQCAFLGL</Hsp_hseq>
50 <Hsp_midline>MASVSVVPASG NT GVD+LPEEMNDMKI DDKEMEA VVDGNGTE GHIIVTTIGGKNGQPKQTISYMAERVVGHGSFG+VFQAKCLETGE VAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPET+HRVIKH+YKMSQRMPLIYVKLYFYQICRALAYIHN+IGVCHRDIKPQNLLVNPHTHQ+KLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYT AIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIF KRMPPEAVDLVSRLLQYSPNLRSTALEALIHPFFDELRDPN RLPNGR LPPLFNFKPHELKGVPV+MLVKLIPEHARKQCAFLGL</Hsp_midline>
51 </Hsp>
52 </Hit_hsps>
53 </Hit>
54 </Iteration_hits>
55 <Iteration_stat>
56 <Statistics>
57 <Statistics_db-num>18996442</Statistics_db-num>
58 <Statistics_db-len>6510958228</Statistics_db-len>
59 <Statistics_hsp-len>0</Statistics_hsp-len>
60 <Statistics_eff-space>0</Statistics_eff-space>
61 <Statistics_kappa>0.041</Statistics_kappa>
62 <Statistics_lambda>0.267</Statistics_lambda>
63 <Statistics_entropy>0.14</Statistics_entropy>
64 </Statistics>
65 </Iteration_stat>
66 </Iteration>
67 </BlastOutput_iterations>
68 </BlastOutput>