Mercurial > repos > gga > tripal_organism_add_organism

comparison organism_add_organism.xml @ 3:92407294b12e draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit d21999bb3e142fd972a3338b70216989a257d5b1
author gga
date Mon, 06 Aug 2018 04:44:48 -0400
parents 56390a41953e
children 2d707e97598b
comparison
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2:e35aee4aa5df 3:92407294b12e
12 12
13 @AUTH@ 13 @AUTH@
14 14
15 tripaille organism add_organism 15 tripaille organism add_organism
16 16
17 #if str($species):
18 --species '$species'
19 #end if
20
21 #if str($description): 17 #if str($description):
22 --comment '$description' 18 --comment '$description'
23 #end if 19 #end if
24 20
25 #if $infra.use_infra: 21 #if $infra.use_infra:
26 --infraspecific_rank '$infra.rank' 22 --infraspecific_rank '$infra.rank'
27 --infraspecific_name '$infra.name' 23 --infraspecific_name '$infra.name'
28 #end if 24 #end if
29 25
30 '$genus' 26 '$genus'
27 '$species'
31 '$common' 28 '$common'
32 '$abbr' 29 '$abbr'
33 30
34 | jq -S . > $results 31 | jq -S . > $results
35 ]]></command> 32 ]]></command>
41 38
42 <param name="species" 39 <param name="species"
43 argument="--species" 40 argument="--species"
44 type="text" 41 type="text"
45 label="Species" 42 label="Species"
46 optional="True"
47 help="e.g.: sapiens" /> 43 help="e.g.: sapiens" />
48 44
49 <param name="abbr" 45 <param name="abbr"
50 type="text" 46 type="text"
51 label="Abbreviation" 47 label="Abbreviation"