Mercurial > repos > gga > tripal_organism_get_organisms

annotate test-data/blast.xml @ 6:5127a6fdbf7c draft default tip

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit ea279e5b47cf3d5767328d17b0e40e57b0238ea1"
author gga
date Wed, 14 Aug 2019 10:04:40 -0400
parents 791692de64d6
children
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791692de64d6 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastx</BlastOutput_program>
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5 <BlastOutput_version>blastx 2.2.25 [Feb-01-2011]</BlastOutput_version>
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6 <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~&quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db>/scratch/mainlab/data/lib/nr</BlastOutput_db>
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8 <BlastOutput_query-ID>lcl|1_0</BlastOutput_query-ID>
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9 <BlastOutput_query-def>orange1.1g015632m PAC:18136217 (mRNA) Citrus sinensis</BlastOutput_query-def>
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10 <BlastOutput_query-len>2075</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
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14 <Parameters_expect>1e-06</Parameters_expect>
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15 <Parameters_gap-open>11</Parameters_gap-open>
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16 <Parameters_gap-extend>1</Parameters_gap-extend>
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17 <Parameters_filter>F</Parameters_filter>
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18 </Parameters>
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19 </BlastOutput_param>
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20 <BlastOutput_iterations>
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21 <Iteration>
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22 <Iteration_iter-num>1</Iteration_iter-num>
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23 <Iteration_query-ID>lcl|1_0</Iteration_query-ID>
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24 <Iteration_query-def>orange1.1g015632m PAC:18136217 (mRNA) Citrus sinensis</Iteration_query-def>
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25 <Iteration_query-len>2075</Iteration_query-len>
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26 <Iteration_hits>
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27 <Hit>
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28 <Hit_num>1</Hit_num>
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29 <Hit_id>gi|224068663|ref|XP_002302794.1|</Hit_id>
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30 <Hit_def>predicted protein [Populus trichocarpa] &gt;gi|222844520|gb|EEE82067.1| predicted protein [Populus trichocarpa]</Hit_def>
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31 <Hit_accession>XP_002302794</Hit_accession>
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32 <Hit_len>409</Hit_len>
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33 <Hit_hsps>
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34 <Hsp>
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35 <Hsp_num>1</Hsp_num>
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36 <Hsp_bit-score>792.727</Hsp_bit-score>
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37 <Hsp_score>2046</Hsp_score>
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38 <Hsp_evalue>0</Hsp_evalue>
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39 <Hsp_query-from>559</Hsp_query-from>
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40 <Hsp_query-to>1767</Hsp_query-to>
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41 <Hsp_hit-from>1</Hsp_hit-from>
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42 <Hsp_hit-to>409</Hsp_hit-to>
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43 <Hsp_query-frame>1</Hsp_query-frame>
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44 <Hsp_identity>387</Hsp_identity>
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45 <Hsp_positive>394</Hsp_positive>
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46 <Hsp_gaps>6</Hsp_gaps>
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47 <Hsp_align-len>409</Hsp_align-len>
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48 <Hsp_qseq>MASVSVVPASG------NTVGVDRLPEEMNDMKIRDDKEMEATVVDGNGTEAGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHHYKMSQRMPLIYVKLYFYQICRALAYIHNTIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFQKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPFFDELRDPNTRLPNGRFLPPLFNFKPHELKGVPVDMLVKLIPEHARKQCAFLGL</Hsp_qseq>
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49 <Hsp_hseq>MASVSVVPASGLRDTLGNTTGVDKLPEEMNDMKISDDKEMEAAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGLVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETIHRVIKHYYKMSQRMPLIYVKLYFYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPFFDELRDPNARLPNGRILPPLFNFKPHELKGVPVEMLVKLIPEHARKQCAFLGL</Hsp_hseq>
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50 <Hsp_midline>MASVSVVPASG NT GVD+LPEEMNDMKI DDKEMEA VVDGNGTE GHIIVTTIGGKNGQPKQTISYMAERVVGHGSFG+VFQAKCLETGE VAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPET+HRVIKH+YKMSQRMPLIYVKLYFYQICRALAYIHN+IGVCHRDIKPQNLLVNPHTHQ+KLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYT AIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIF KRMPPEAVDLVSRLLQYSPNLRSTALEALIHPFFDELRDPN RLPNGR LPPLFNFKPHELKGVPV+MLVKLIPEHARKQCAFLGL</Hsp_midline>
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51 </Hsp>
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52 </Hit_hsps>
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53 </Hit>
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54 </Iteration_hits>
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55 <Iteration_stat>
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56 <Statistics>
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57 <Statistics_db-num>18996442</Statistics_db-num>
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58 <Statistics_db-len>6510958228</Statistics_db-len>
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59 <Statistics_hsp-len>0</Statistics_hsp-len>
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60 <Statistics_eff-space>0</Statistics_eff-space>
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61 <Statistics_kappa>0.041</Statistics_kappa>
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62 <Statistics_lambda>0.267</Statistics_lambda>
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63 <Statistics_entropy>0.14</Statistics_entropy>
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64 </Statistics>
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65 </Iteration_stat>
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66 </Iteration>
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67 </BlastOutput_iterations>
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68 </BlastOutput>