Mercurial > repos > gga > tripal_phylogeny_sync

annotate phylogeny_sync.xml @ 3:874672e702a0 draft default tip

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"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit ea279e5b47cf3d5767328d17b0e40e57b0238ea1"
author gga
date Wed, 14 Aug 2019 10:05:51 -0400
parents f70a7f06ef30
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d1f5c6c38277 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit d21999bb3e142fd972a3338b70216989a257d5b1
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1 <?xml version="1.0"?>
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2 <tool id="phylogeny_sync" profile="16.04" name="Synchronize phylogeny data" version="@WRAPPER_VERSION@.0">
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3 <description>from Chado to Tripal</description>
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4 <macros>
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5 <import>macros.xml</import>
d1f5c6c38277 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit d21999bb3e142fd972a3338b70216989a257d5b1
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6 </macros>
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7 <expand macro="requirements"/>
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8 <code file="tripal.py"/>
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9 <expand macro="stdio"/>
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10 <command><![CDATA[
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12 @AUTH@
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d1f5c6c38277 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit d21999bb3e142fd972a3338b70216989a257d5b1
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14 tripaille phylogeny sync
d1f5c6c38277 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit d21999bb3e142fd972a3338b70216989a257d5b1
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d1f5c6c38277 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit d21999bb3e142fd972a3338b70216989a257d5b1
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16 &&
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17
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18 echo "Data loaded" > '$results'
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19 ]]></command>
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20 <inputs>
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21 <expand macro="wait_for"/>
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22 </inputs>
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23 <outputs>
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24 <data format="json" name="results" label="Synchronize Phylogeny into Tripal" />
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25 </outputs>
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26 <tests>
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27 <test expect_failure="true">
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28 <expand macro="test_result" />
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29 </test>
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30 </tests>
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31 <help><![CDATA[
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32 @HELP_OVERVIEW@
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33
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34 **Synchronize Phylogeny**
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35
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36 With this tool, you can synchronize phylogeny data from the Chado database into the Tripal instance.
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37 Corresponding Drupal nodes will be created.
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38
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39 @HELP@
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40 ]]></help>
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41 <expand macro="citation"/>
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42 </tool>