Mercurial > repos > gga > tripal_phylogeny_sync
comparison phylogeny_sync.xml @ 0:d1f5c6c38277 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit d21999bb3e142fd972a3338b70216989a257d5b1
| author | gga |
|---|---|
| date | Mon, 06 Aug 2018 04:45:30 -0400 |
| parents | |
| children | f70a7f06ef30 |
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| -1:000000000000 | 0:d1f5c6c38277 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="phylogeny_sync" profile="16.04" name="Synchronize phylogeny data" version="@WRAPPER_VERSION@.1"> | |
| 3 <description>from Chado to Tripal</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"/> | |
| 8 <code file="tripal.py"/> | |
| 9 <expand macro="stdio"/> | |
| 10 <command><![CDATA[ | |
| 11 | |
| 12 @AUTH@ | |
| 13 | |
| 14 tripaille phylogeny sync | |
| 15 | |
| 16 && | |
| 17 | |
| 18 echo "Data loaded" > $results | |
| 19 ]]></command> | |
| 20 <inputs> | |
| 21 <expand macro="wait_for"/> | |
| 22 </inputs> | |
| 23 <outputs> | |
| 24 <data format="json" name="results" label="Synchronize Phylogeny into Tripal" /> | |
| 25 </outputs> | |
| 26 <tests> | |
| 27 <test expect_failure="true"> | |
| 28 <expand macro="test_result" /> | |
| 29 </test> | |
| 30 </tests> | |
| 31 <help><![CDATA[ | |
| 32 @HELP_OVERVIEW@ | |
| 33 | |
| 34 **Synchronize Phylogeny** | |
| 35 | |
| 36 With this tool, you can synchronize phylogeny data from the Chado database into the Tripal instance. | |
| 37 Corresponding Drupal nodes will be created. | |
| 38 | |
| 39 @HELP@ | |
| 40 ]]></help> | |
| 41 <expand macro="citation"/> | |
| 42 </tool> |