Mercurial > repos > gianmarco_piccinno > project_rm

diff galaxy/run_codon_switch.sh @ 42:439b70949f8d draft

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author gianmarco_piccinno
date Mon, 20 May 2019 16:44:00 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy/run_codon_switch.sh	Mon May 20 16:44:00 2019 -0400
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+#python setup.py build_ext --inplace
+python codon_switch.py -i pEPSA5_annotated.gb -l genbank -p patterns.txt -g S_aureus_JE2.gbf -q genbank -c Bacterial -f 3 -m 27 -d demonstration -o ./output # -d demonstration