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comparison armdb_mirbase.py @ 8:6f0fa933b3ed draft

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author glogobyte
date Wed, 20 Oct 2021 15:16:49 +0000
parents 40c50594116c
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7:40c50594116c 8:6f0fa933b3ed
3 import time 3 import time
4 import urllib.request 4 import urllib.request
5 from multiprocessing import Process, Queue 5 from multiprocessing import Process, Queue
6 import itertools 6 import itertools
7 7
8
9
10 #---------------------------------Arguments------------------------------------------ 8 #---------------------------------Arguments------------------------------------------
11 9
12 subprocess.call(['mkdir', 'out']) 10 subprocess.call(['mkdir', 'out'])
13 parser = argparse.ArgumentParser() 11 parser = argparse.ArgumentParser()
14 12
15 parser.add_argument("-pos", "--positions", help="", action="store") 13 parser.add_argument("-pos", "--positions", help="number of additional nucleotides", action="store")
16 parser.add_argument("-tool_dir", "--tool_directory", help="tool directory path", action="store") 14 parser.add_argument("-tool_dir", "--tool_directory", help="tool directory path", action="store")
17 parser.add_argument("-gen", "--genome", help="tool directory path", action="store") 15 parser.add_argument("-gen", "--genome", help="genome version", action="store")
18 parser.add_argument("-gff3", "--gff", help="",action="store") 16 parser.add_argument("-gff3", "--gff", help="gff file",action="store")
19 args = parser.parse_args() 17 args = parser.parse_args()
20 18
21 #-----------------------Download and read of the gff3 file--------------------------------- 19 #-----------------------Download and read of the gff3 file---------------------------------
22 20
23 def read_url(q): 21 def read_url(q):