Mercurial > repos > glogobyte > isoread
comparison mirbase_functions.py @ 34:66e4d57f11c9 draft
Uploaded
author | glogobyte |
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date | Thu, 02 Dec 2021 14:12:59 +0000 |
parents | 77ba8dde6fb7 |
children |
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33:77ba8dde6fb7 | 34:66e4d57f11c9 |
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688 | 688 |
689 """ | 689 """ |
690 | 690 |
691 def download_matures(matures,org_name): | 691 def download_matures(matures,org_name): |
692 | 692 |
693 url = 'ftp://mirbase.org/pub/mirbase/CURRENT/mature.fa.gz' | 693 url = 'https://www.mirbase.org/ftp/CURRENT/mature.fa.gz' |
694 data = urllib.request.urlopen(url).read() | 694 data = urllib.request.urlopen(url).read() |
695 file_mirna = gzip.decompress(data).decode('utf-8') | 695 file_mirna = gzip.decompress(data).decode('utf-8') |
696 file_mirna = file_mirna.split("\n") | 696 file_mirna = file_mirna.split("\n") |
697 | 697 |
698 for i in range(0,len(file_mirna)-1,2): | 698 for i in range(0,len(file_mirna)-1,2): |