comparison mirbase_functions.py @ 34:66e4d57f11c9 draft

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author glogobyte
date Thu, 02 Dec 2021 14:12:59 +0000
parents 77ba8dde6fb7
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33:77ba8dde6fb7 34:66e4d57f11c9
688 688
689 """ 689 """
690 690
691 def download_matures(matures,org_name): 691 def download_matures(matures,org_name):
692 692
693 url = 'ftp://mirbase.org/pub/mirbase/CURRENT/mature.fa.gz' 693 url = 'https://www.mirbase.org/ftp/CURRENT/mature.fa.gz'
694 data = urllib.request.urlopen(url).read() 694 data = urllib.request.urlopen(url).read()
695 file_mirna = gzip.decompress(data).decode('utf-8') 695 file_mirna = gzip.decompress(data).decode('utf-8')
696 file_mirna = file_mirna.split("\n") 696 file_mirna = file_mirna.split("\n")
697 697
698 for i in range(0,len(file_mirna)-1,2): 698 for i in range(0,len(file_mirna)-1,2):