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comparison mirbase.py @ 23:6d3abc45aa49 draft

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Uploaded
author glogobyte
date Wed, 20 Oct 2021 12:11:43 +0000
parents f10c8f43f010
children 6e365f2eb24a
comparison
equal deleted inserted replaced
22:958330b9bce3 23:6d3abc45aa49
194 procs = [Process(target=DB_write,args=(x[0],x[1],x[2],x[3],1)) for x in con_data] 194 procs = [Process(target=DB_write,args=(x[0],x[1],x[2],x[3],1)) for x in con_data]
195 procs.extend([Process(target=DB_write,args=(x[0],x[1],x[2],x[3],1)) for x in tre_data]) 195 procs.extend([Process(target=DB_write,args=(x[0],x[1],x[2],x[3],1)) for x in tre_data])
196 procs.extend([Process(target=make_spider,args=(merg_nam_control_group,merg_nam_treated_group,args.group1,args.group2))]) 196 procs.extend([Process(target=make_spider,args=(merg_nam_control_group,merg_nam_treated_group,args.group1,args.group2))])
197 197
198 if args.anal == "1": 198 if args.anal == "1":
199 procs.extend([Process(target=pie_temp,args=(merg_nam_control_group,con_unmap_seq.value,con_unmap_counts.value,merg_nam_treated_group,tre_unmap_seq.value,tre_unmap_counts.value,group_name1,group_name2))]) 199 procs.extend([Process(target=pie_temp,args=(merg_nam_control_group,con_unmap_seq.value,con_unmap_counts.value,merg_nam_treated_group,tre_unmap_seq.value,tre_unmap_counts.value,args.group1,args.group2))])
200 200
201 [p.start() for p in procs] 201 [p.start() for p in procs]
202 202
203 # Export the pdf report file 203 # Export the pdf report file
204 if args.anal=="1": 204 if args.anal=="1":
247 ps_write.join() 247 ps_write.join()
248 [p.join() for p in ps1_matrix] 248 [p.join() for p in ps1_matrix]
249 249
250 ############################## Detection of non-template ####################################### 250 ############################## Detection of non-template #######################################
251 251
252 starttime10 = time.time()
253
254 if args.anal == "2": 252 if args.anal == "2":
255 253
256 # Initialization of the managers between the proccesses 254 # Initialization of the managers between the proccesses
257 # First group of samples (controls) 255 # First group of samples (controls)
258 n_con_data= manager.list() 256 n_con_data= manager.list()
412 [p.start() for p in ps1_matrix] 410 [p.start() for p in ps1_matrix]
413 411
414 ps_write.join() 412 ps_write.join()
415 [p.join() for p in ps1_matrix] 413 [p.join() for p in ps1_matrix]
416 procs1.join() 414 procs1.join()
417 print('That took {} seconds'.format(time.time() - starttime10)) 415 print('Running time: {} seconds'.format(time.time() - starttime))
418 print('That took {} seconds'.format(time.time() - starttime)) 416
419