Mercurial > repos > glogobyte > isoread
comparison mirbase_functions.py @ 33:77ba8dde6fb7 draft
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| author | glogobyte |
|---|---|
| date | Fri, 22 Oct 2021 19:34:27 +0000 |
| parents | 47232a73a46b |
| children | 66e4d57f11c9 |
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| 32:5d232330e81f | 33:77ba8dde6fb7 |
|---|---|
| 211 # Correction of metrics due to the collapsing and removing of duplicates for the production of Database | 211 # Correction of metrics due to the collapsing and removing of duplicates for the production of Database |
| 212 for y in sorted_uni_arms: | 212 for y in sorted_uni_arms: |
| 213 counts=0 | 213 counts=0 |
| 214 seqs=0 | 214 seqs=0 |
| 215 for x in collapsed_mirnas: | 215 for x in collapsed_mirnas: |
| 216 if y[0]==x[2].split("_")[0]: | 216 if y[0] in x[2].split("_")[0]: |
| 217 counts+=int(x[0].split("-")[1]) | 217 counts+=int(x[0].split("-")[1]) |
| 218 seqs+=1 | 218 seqs+=1 |
| 219 | 219 |
| 220 y[1]=seqs | 220 y[1]=seqs |
| 221 y[2]=counts | 221 y[2]=counts |