Mercurial > repos > glogobyte > mirviz
comparison README.md @ 3:64a48e3412f2 draft
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| author | glogobyte |
|---|---|
| date | Wed, 13 Oct 2021 11:18:47 +0000 |
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| 2:2ae5bf8c80a3 | 3:64a48e3412f2 |
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| 165 <link rel="canonical" href="https://github.com/Glogobyte/isomiR_tools/blob/main/README.md" data-pjax-transient> | |
| 166 | |
| 167 | |
| 168 <meta name="browser-stats-url" content="https://api.github.com/_private/browser/stats"> | |
| 169 | |
| 170 <meta name="browser-errors-url" content="https://api.github.com/_private/browser/errors"> | |
| 171 | |
| 172 <meta name="browser-optimizely-client-errors-url" content="https://api.github.com/_private/browser/optimizely_client/errors"> | |
| 173 | |
| 174 <link rel="mask-icon" href="https://github.githubassets.com/pinned-octocat.svg" color="#000000"> | |
| 175 <link rel="alternate icon" class="js-site-favicon" type="image/png" href="https://github.githubassets.com/favicons/favicon.png"> | |
| 176 <link rel="icon" class="js-site-favicon" type="image/svg+xml" href="https://github.githubassets.com/favicons/favicon.svg"> | |
| 177 | |
| 178 <meta name="theme-color" content="#1e2327"> | |
| 179 <meta name="color-scheme" content="light dark" /> | |
| 180 | |
| 181 | |
| 182 <link rel="manifest" href="/manifest.json" crossOrigin="use-credentials"> | |
| 183 | |
| 184 </head> | |
| 185 | |
| 186 <body class="logged-out env-production page-responsive page-blob" style="word-wrap: break-word;"> | |
| 187 | |
| 188 | |
| 189 <div class="position-relative js-header-wrapper "> | |
| 190 <a href="#start-of-content" class="px-2 py-4 color-bg-info-inverse color-text-white show-on-focus js-skip-to-content">Skip to content</a> | |
| 191 <span data-view-component="true" class="progress-pjax-loader js-pjax-loader-bar Progress position-fixed width-full"> | |
| 192 <span style="width: 0%;" data-view-component="true" class="Progress-item progress-pjax-loader-bar color-bg-info-inverse"></span> | |
| 193 </span> | |
| 194 | |
| 195 | |
| 196 | |
| 197 | |
| 198 | |
| 199 <header class="Header-old header-logged-out js-details-container Details position-relative f4 py-2" role="banner"> | |
| 200 <div class="container-xl d-lg-flex flex-items-center p-responsive"> | |
| 201 <div class="d-flex flex-justify-between flex-items-center"> | |
| 202 <a class="mr-4" href="https://github.com/" aria-label="Homepage" data-ga-click="(Logged out) Header, go to homepage, icon:logo-wordmark"> | |
| 203 <svg height="32" aria-hidden="true" viewBox="0 0 16 16" version="1.1" width="32" data-view-component="true" class="octicon octicon-mark-github color-text-white"> | |
| 204 <path fill-rule="evenodd" d="M8 0C3.58 0 0 3.58 0 8c0 3.54 2.29 6.53 5.47 7.59.4.07.55-.17.55-.38 0-.19-.01-.82-.01-1.49-2.01.37-2.53-.49-2.69-.94-.09-.23-.48-.94-.82-1.13-.28-.15-.68-.52-.01-.53.63-.01 1.08.58 1.23.82.72 1.21 1.87.87 2.33.66.07-.52.28-.87.51-1.07-1.78-.2-3.64-.89-3.64-3.95 0-.87.31-1.59.82-2.15-.08-.2-.36-1.02.08-2.12 0 0 .67-.21 2.2.82.64-.18 1.32-.27 2-.27.68 0 1.36.09 2 .27 1.53-1.04 2.2-.82 2.2-.82.44 1.1.16 1.92.08 2.12.51.56.82 1.27.82 2.15 0 3.07-1.87 3.75-3.65 3.95.29.25.54.73.54 1.48 0 1.07-.01 1.93-.01 2.2 0 .21.15.46.55.38A8.013 8.013 0 0016 8c0-4.42-3.58-8-8-8z"></path> | |
| 205 </svg> | |
| 206 </a> | |
| 207 | |
| 208 <div class="d-lg-none css-truncate css-truncate-target width-fit p-2"> | |
| 209 | |
| 210 | |
| 211 </div> | |
| 212 | |
| 213 <div class="d-flex flex-items-center"> | |
| 214 <a href="/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fblob%2Fshow&source=header-repo" | |
| 215 class="d-inline-block d-lg-none f5 color-text-white no-underline border color-border-default rounded-2 px-2 py-1 mr-3 mr-sm-5" | |
| 216 data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/Glogobyte/isomiR_tools/blob/main/README.md","user_id":null}}" data-hydro-click-hmac="e97d0067ae58d227718eb22f4ac5635c7ec572f93f9ea2ff0345cc6ec709b95e" | |
| 217 > | |
| 218 Sign up | |
| 219 </a> | |
| 220 | |
| 221 <button aria-label="Toggle navigation" aria-expanded="false" type="button" data-view-component="true" class="js-details-target btn-link d-lg-none mt-1"> | |
| 222 | |
| 223 | |
| 224 <svg aria-hidden="true" height="24" viewBox="0 0 16 16" version="1.1" width="24" data-view-component="true" class="octicon octicon-three-bars color-text-white"> | |
| 225 <path fill-rule="evenodd" d="M1 2.75A.75.75 0 011.75 2h12.5a.75.75 0 110 1.5H1.75A.75.75 0 011 2.75zm0 5A.75.75 0 011.75 7h12.5a.75.75 0 110 1.5H1.75A.75.75 0 011 7.75zM1.75 12a.75.75 0 100 1.5h12.5a.75.75 0 100-1.5H1.75z"></path> | |
| 226 </svg> | |
| 227 | |
| 228 | |
| 229 | |
| 230 </button> </div> | |
| 231 </div> | |
| 232 | |
| 233 <div class="HeaderMenu HeaderMenu--logged-out position-fixed top-0 right-0 bottom-0 height-fit position-lg-relative d-lg-flex flex-justify-between flex-items-center flex-auto"> | |
| 234 <div class="d-flex d-lg-none flex-justify-end border-bottom color-bg-subtle p-3"> | |
| 235 <button aria-label="Toggle navigation" aria-expanded="false" type="button" data-view-component="true" class="js-details-target btn-link"> | |
| 236 | |
| 237 | |
| 238 <svg aria-hidden="true" height="24" viewBox="0 0 24 24" version="1.1" width="24" data-view-component="true" class="octicon octicon-x color-icon-secondary"> | |
| 239 <path fill-rule="evenodd" d="M5.72 5.72a.75.75 0 011.06 0L12 10.94l5.22-5.22a.75.75 0 111.06 1.06L13.06 12l5.22 5.22a.75.75 0 11-1.06 1.06L12 13.06l-5.22 5.22a.75.75 0 01-1.06-1.06L10.94 12 5.72 6.78a.75.75 0 010-1.06z"></path> | |
| 240 </svg> | |
| 241 | |
| 242 | |
| 243 | |
| 244 </button> </div> | |
| 245 | |
| 246 <nav class="mt-0 px-3 px-lg-0 mb-5 mb-lg-0" aria-label="Global"> | |
| 247 <ul class="d-lg-flex list-style-none"> | |
| 248 <li class="d-block d-lg-flex flex-lg-nowrap flex-lg-items-center border-bottom border-lg-bottom-0 mr-0 mr-lg-3 edge-item-fix position-relative flex-wrap flex-justify-between d-flex flex-items-center "> | |
| 249 <details class="HeaderMenu-details details-overlay details-reset width-full"> | |
| 250 <summary class="HeaderMenu-summary HeaderMenu-link px-0 py-3 border-0 no-wrap d-block d-lg-inline-block"> | |
| 251 Why GitHub? | |
| 252 <svg x="0px" y="0px" viewBox="0 0 14 8" xml:space="preserve" fill="none" class="icon-chevon-down-mktg position-absolute position-lg-relative"> | |
| 253 <path d="M1,1l6.2,6L13,1"></path> | |
| 254 </svg> | |
| 255 </summary> | |
| 256 <div class="dropdown-menu flex-auto rounded px-0 mt-0 pb-4 p-lg-4 position-relative position-lg-absolute left-0 left-lg-n4"> | |
| 257 <a href="/features" class="py-2 lh-condensed-ultra d-block Link--primary no-underline h5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Features">Features <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a> | |
| 258 <ul class="list-style-none f5 pb-3"> | |
| 259 | |
| 260 | |
| 261 <li class="edge-item-fix"><a href="/mobile" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover">Mobile <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 262 <li class="edge-item-fix"><a href="/features/actions" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover">Actions <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 263 <li class="edge-item-fix"><a href="/features/codespaces" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover">Codespaces <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 264 <li class="edge-item-fix"><a href="/features/packages" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover">Packages <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 265 <li class="edge-item-fix"><a href="/features/security" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover">Security <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 266 <li class="edge-item-fix"><a href="/features/code-review/" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover">Code review <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 267 <li class="edge-item-fix"><a href="/features/issues/" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover">Issues <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 268 <li class="edge-item-fix"><a href="/features/integrations" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover">Integrations <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 269 | |
| 270 | |
| 271 </ul> | |
| 272 | |
| 273 <ul class="list-style-none mb-0 border-lg-top pt-lg-3"> | |
| 274 <li class="edge-item-fix"><a href="/sponsors" class="py-2 lh-condensed-ultra d-block no-underline Link--primary no-underline h5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Sponsors">GitHub Sponsors <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 275 <li class="edge-item-fix"><a href="/customer-stories" class="py-2 lh-condensed-ultra d-block no-underline Link--primary no-underline h5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Customer stories">Customer stories<span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 276 </ul> | |
| 277 </div> | |
| 278 </details> | |
| 279 </li> | |
| 280 <li class="border-bottom border-lg-bottom-0 mr-0 mr-lg-3"> | |
| 281 <a href="/team" class="HeaderMenu-link no-underline py-3 d-block d-lg-inline-block" data-ga-click="(Logged out) Header, go to Team">Team</a> | |
| 282 </li> | |
| 283 <li class="border-bottom border-lg-bottom-0 mr-0 mr-lg-3"> | |
| 284 <a href="/enterprise" class="HeaderMenu-link no-underline py-3 d-block d-lg-inline-block" data-ga-click="(Logged out) Header, go to Enterprise">Enterprise</a> | |
| 285 </li> | |
| 286 | |
| 287 <li class="d-block d-lg-flex flex-lg-nowrap flex-lg-items-center border-bottom border-lg-bottom-0 mr-0 mr-lg-3 edge-item-fix position-relative flex-wrap flex-justify-between d-flex flex-items-center "> | |
| 288 <details class="HeaderMenu-details details-overlay details-reset width-full"> | |
| 289 <summary class="HeaderMenu-summary HeaderMenu-link px-0 py-3 border-0 no-wrap d-block d-lg-inline-block"> | |
| 290 Explore | |
| 291 <svg x="0px" y="0px" viewBox="0 0 14 8" xml:space="preserve" fill="none" class="icon-chevon-down-mktg position-absolute position-lg-relative"> | |
| 292 <path d="M1,1l6.2,6L13,1"></path> | |
| 293 </svg> | |
| 294 </summary> | |
| 295 | |
| 296 <div class="dropdown-menu flex-auto rounded px-0 pt-2 pb-0 mt-0 pb-4 p-lg-4 position-relative position-lg-absolute left-0 left-lg-n4"> | |
| 297 <ul class="list-style-none mb-3"> | |
| 298 <li class="edge-item-fix"><a href="/explore" class="py-2 lh-condensed-ultra d-block Link--primary no-underline h5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Explore">Explore GitHub <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 299 </ul> | |
| 300 | |
| 301 <h4 class="color-fg-muted text-normal text-mono f5 mb-2 border-lg-top pt-lg-3">Learn and contribute</h4> | |
| 302 <ul class="list-style-none mb-3"> | |
| 303 <li class="edge-item-fix"><a href="/topics" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Topics">Topics <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 304 <li class="edge-item-fix"><a href="/collections" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Collections">Collections <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 305 <li class="edge-item-fix"><a href="/trending" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Trending">Trending <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 306 <li class="edge-item-fix"><a href="https://lab.github.com/" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Learning lab">Learning Lab <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 307 <li class="edge-item-fix"><a href="https://opensource.guide" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Open source guides">Open source guides <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 308 </ul> | |
| 309 | |
| 310 <h4 class="color-fg-muted text-normal text-mono f5 mb-2 border-lg-top pt-lg-3">Connect with others</h4> | |
| 311 <ul class="list-style-none mb-0"> | |
| 312 <li class="edge-item-fix"><a href="https://github.com/readme" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover">The ReadME Project <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 313 <li class="edge-item-fix"><a href="https://github.com/events" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Events">Events <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 314 <li class="edge-item-fix"><a href="https://github.community" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Community forum">Community forum <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 315 <li class="edge-item-fix"><a href="https://education.github.com" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to GitHub Education">GitHub Education <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 316 <li class="edge-item-fix"><a href="https://stars.github.com" class="py-2 pb-0 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to GitHub Stars Program">GitHub Stars program <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 317 </ul> | |
| 318 </div> | |
| 319 </details> | |
| 320 </li> | |
| 321 | |
| 322 <li class="border-bottom border-lg-bottom-0 mr-0 mr-lg-3"> | |
| 323 <a href="/marketplace" class="HeaderMenu-link no-underline py-3 d-block d-lg-inline-block" data-ga-click="(Logged out) Header, go to Marketplace">Marketplace</a> | |
| 324 </li> | |
| 325 | |
| 326 <li class="d-block d-lg-flex flex-lg-nowrap flex-lg-items-center border-bottom border-lg-bottom-0 mr-0 mr-lg-3 edge-item-fix position-relative flex-wrap flex-justify-between d-flex flex-items-center "> | |
| 327 <details class="HeaderMenu-details details-overlay details-reset width-full"> | |
| 328 <summary class="HeaderMenu-summary HeaderMenu-link px-0 py-3 border-0 no-wrap d-block d-lg-inline-block"> | |
| 329 Pricing | |
| 330 <svg x="0px" y="0px" viewBox="0 0 14 8" xml:space="preserve" fill="none" class="icon-chevon-down-mktg position-absolute position-lg-relative"> | |
| 331 <path d="M1,1l6.2,6L13,1"></path> | |
| 332 </svg> | |
| 333 </summary> | |
| 334 | |
| 335 <div class="dropdown-menu flex-auto rounded px-0 pt-2 pb-4 mt-0 p-lg-4 position-relative position-lg-absolute left-0 left-lg-n4"> | |
| 336 <a href="/pricing" class="pb-2 lh-condensed-ultra d-block Link--primary no-underline h5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Pricing">Plans <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a> | |
| 337 | |
| 338 <ul class="list-style-none mb-3"> | |
| 339 <li class="edge-item-fix"><a href="/pricing#feature-comparison" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Compare plans">Compare plans <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 340 <li class="edge-item-fix"><a href="https://github.com/enterprise/contact" class="py-2 lh-condensed-ultra d-block Link--secondary no-underline f5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Contact Sales">Contact Sales <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 341 </ul> | |
| 342 | |
| 343 <ul class="list-style-none mb-0 border-lg-top pt-lg-3"> | |
| 344 <li class="edge-item-fix"><a href="https://education.github.com" class="py-2 pb-0 lh-condensed-ultra d-block no-underline Link--primary no-underline h5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Education">Education <span class="Bump-link-symbol float-right text-normal color-fg-muted pr-3">→</span></a></li> | |
| 345 </ul> | |
| 346 </div> | |
| 347 </details> | |
| 348 </li> | |
| 349 </ul> | |
| 350 </nav> | |
| 351 | |
| 352 <div class="d-lg-flex flex-items-center px-3 px-lg-0 text-center text-lg-left"> | |
| 353 <div class="d-lg-flex min-width-0 mb-3 mb-lg-0"> | |
| 354 | |
| 355 | |
| 356 | |
| 357 | |
| 358 <div class="header-search flex-auto js-site-search position-relative flex-self-stretch flex-md-self-auto mb-3 mb-md-0 mr-0 mr-md-3 scoped-search site-scoped-search js-jump-to" | |
| 359 > | |
| 360 <div class="position-relative"> | |
| 361 <!-- '"` --><!-- </textarea></xmp> --></option></form><form class="js-site-search-form" role="search" aria-label="Site" data-scope-type="Repository" data-scope-id="323269699" data-scoped-search-url="/Glogobyte/isomiR_tools/search" data-owner-scoped-search-url="/users/Glogobyte/search" data-unscoped-search-url="/search" action="/Glogobyte/isomiR_tools/search" accept-charset="UTF-8" method="get"> | |
| 362 <label class="form-control input-sm header-search-wrapper p-0 js-chromeless-input-container header-search-wrapper-jump-to position-relative d-flex flex-justify-between flex-items-center"> | |
| 363 <input type="text" | |
| 364 class="form-control input-sm header-search-input jump-to-field js-jump-to-field js-site-search-focus js-site-search-field is-clearable" | |
| 365 data-hotkey=s,/ | |
| 366 name="q" | |
| 367 data-test-selector="nav-search-input" | |
| 368 placeholder="Search" | |
| 369 data-unscoped-placeholder="Search GitHub" | |
| 370 data-scoped-placeholder="Search" | |
| 371 autocapitalize="off" | |
| 372 role="combobox" | |
| 373 aria-haspopup="listbox" | |
| 374 aria-expanded="false" | |
| 375 aria-autocomplete="list" | |
| 376 aria-controls="jump-to-results" | |
| 377 aria-label="Search" | |
| 378 data-jump-to-suggestions-path="/_graphql/GetSuggestedNavigationDestinations" | |
| 379 spellcheck="false" | |
| 380 autocomplete="off" | |
| 381 > | |
| 382 <input type="hidden" data-csrf="true" class="js-data-jump-to-suggestions-path-csrf" value="DzB6IH6TeIu2fl/kDbJzKnrn9xKy5uu9z1L0rEt4vgQiSv4sYYXkGRJZ/AnL5IVvBN6ObdGtnIP/4bBd3jf5AA==" /> | |
| 383 <input type="hidden" class="js-site-search-type-field" name="type" > | |
| 384 <svg xmlns="http://www.w3.org/2000/svg" width="22" height="20" aria-hidden="true" class="mr-1 header-search-key-slash"><path fill="none" stroke="#979A9C" opacity=".4" d="M3.5.5h12c1.7 0 3 1.3 3 3v13c0 1.7-1.3 3-3 3h-12c-1.7 0-3-1.3-3-3v-13c0-1.7 1.3-3 3-3z"></path><path fill="#979A9C" d="M11.8 6L8 15.1h-.9L10.8 6h1z"></path></svg> | |
| 385 | |
| 386 | |
| 387 <div class="Box position-absolute overflow-hidden d-none jump-to-suggestions js-jump-to-suggestions-container"> | |
| 388 | |
| 389 <ul class="d-none js-jump-to-suggestions-template-container"> | |
| 390 | |
| 391 | |
| 392 <li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-suggestion" role="option"> | |
| 393 <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="suggestion"> | |
| 394 <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> | |
| 395 <svg title="Repository" aria-label="Repository" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo js-jump-to-octicon-repo d-none flex-shrink-0"> | |
| 396 <path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path> | |
| 397 </svg> | |
| 398 <svg title="Project" aria-label="Project" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project js-jump-to-octicon-project d-none flex-shrink-0"> | |
| 399 <path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path> | |
| 400 </svg> | |
| 401 <svg title="Search" aria-label="Search" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search js-jump-to-octicon-search d-none flex-shrink-0"> | |
| 402 <path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path> | |
| 403 </svg> | |
| 404 </div> | |
| 405 | |
| 406 <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> | |
| 407 | |
| 408 <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> | |
| 409 </div> | |
| 410 | |
| 411 <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> | |
| 412 <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> | |
| 413 In this repository | |
| 414 </span> | |
| 415 <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> | |
| 416 All GitHub | |
| 417 </span> | |
| 418 <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> | |
| 419 </div> | |
| 420 | |
| 421 <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> | |
| 422 Jump to | |
| 423 <span class="d-inline-block ml-1 v-align-middle">↵</span> | |
| 424 </div> | |
| 425 </a> | |
| 426 </li> | |
| 427 | |
| 428 </ul> | |
| 429 | |
| 430 <ul class="d-none js-jump-to-no-results-template-container"> | |
| 431 <li class="d-flex flex-justify-center flex-items-center f5 d-none js-jump-to-suggestion p-2"> | |
| 432 <span class="color-text-secondary">No suggested jump to results</span> | |
| 433 </li> | |
| 434 </ul> | |
| 435 | |
| 436 <ul id="jump-to-results" role="listbox" class="p-0 m-0 js-navigation-container jump-to-suggestions-results-container js-jump-to-suggestions-results-container"> | |
| 437 | |
| 438 | |
| 439 <li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-scoped-search d-none" role="option"> | |
| 440 <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="scoped_search"> | |
| 441 <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> | |
| 442 <svg title="Repository" aria-label="Repository" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo js-jump-to-octicon-repo d-none flex-shrink-0"> | |
| 443 <path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path> | |
| 444 </svg> | |
| 445 <svg title="Project" aria-label="Project" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project js-jump-to-octicon-project d-none flex-shrink-0"> | |
| 446 <path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path> | |
| 447 </svg> | |
| 448 <svg title="Search" aria-label="Search" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search js-jump-to-octicon-search d-none flex-shrink-0"> | |
| 449 <path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path> | |
| 450 </svg> | |
| 451 </div> | |
| 452 | |
| 453 <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> | |
| 454 | |
| 455 <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> | |
| 456 </div> | |
| 457 | |
| 458 <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> | |
| 459 <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> | |
| 460 In this repository | |
| 461 </span> | |
| 462 <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> | |
| 463 All GitHub | |
| 464 </span> | |
| 465 <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> | |
| 466 </div> | |
| 467 | |
| 468 <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> | |
| 469 Jump to | |
| 470 <span class="d-inline-block ml-1 v-align-middle">↵</span> | |
| 471 </div> | |
| 472 </a> | |
| 473 </li> | |
| 474 | |
| 475 | |
| 476 | |
| 477 <li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-owner-scoped-search d-none" role="option"> | |
| 478 <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="owner_scoped_search"> | |
| 479 <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> | |
| 480 <svg title="Repository" aria-label="Repository" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo js-jump-to-octicon-repo d-none flex-shrink-0"> | |
| 481 <path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path> | |
| 482 </svg> | |
| 483 <svg title="Project" aria-label="Project" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project js-jump-to-octicon-project d-none flex-shrink-0"> | |
| 484 <path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path> | |
| 485 </svg> | |
| 486 <svg title="Search" aria-label="Search" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search js-jump-to-octicon-search d-none flex-shrink-0"> | |
| 487 <path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path> | |
| 488 </svg> | |
| 489 </div> | |
| 490 | |
| 491 <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> | |
| 492 | |
| 493 <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> | |
| 494 </div> | |
| 495 | |
| 496 <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> | |
| 497 <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this user"> | |
| 498 In this user | |
| 499 </span> | |
| 500 <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> | |
| 501 All GitHub | |
| 502 </span> | |
| 503 <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> | |
| 504 </div> | |
| 505 | |
| 506 <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> | |
| 507 Jump to | |
| 508 <span class="d-inline-block ml-1 v-align-middle">↵</span> | |
| 509 </div> | |
| 510 </a> | |
| 511 </li> | |
| 512 | |
| 513 | |
| 514 | |
| 515 <li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-global-search d-none" role="option"> | |
| 516 <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="global_search"> | |
| 517 <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> | |
| 518 <svg title="Repository" aria-label="Repository" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo js-jump-to-octicon-repo d-none flex-shrink-0"> | |
| 519 <path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path> | |
| 520 </svg> | |
| 521 <svg title="Project" aria-label="Project" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project js-jump-to-octicon-project d-none flex-shrink-0"> | |
| 522 <path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path> | |
| 523 </svg> | |
| 524 <svg title="Search" aria-label="Search" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search js-jump-to-octicon-search d-none flex-shrink-0"> | |
| 525 <path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path> | |
| 526 </svg> | |
| 527 </div> | |
| 528 | |
| 529 <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> | |
| 530 | |
| 531 <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> | |
| 532 </div> | |
| 533 | |
| 534 <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> | |
| 535 <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> | |
| 536 In this repository | |
| 537 </span> | |
| 538 <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> | |
| 539 All GitHub | |
| 540 </span> | |
| 541 <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> | |
| 542 </div> | |
| 543 | |
| 544 <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> | |
| 545 Jump to | |
| 546 <span class="d-inline-block ml-1 v-align-middle">↵</span> | |
| 547 </div> | |
| 548 </a> | |
| 549 </li> | |
| 550 | |
| 551 | |
| 552 </ul> | |
| 553 | |
| 554 </div> | |
| 555 </label> | |
| 556 </form> </div> | |
| 557 </div> | |
| 558 | |
| 559 </div> | |
| 560 | |
| 561 <div class="position-relative mr-3 mb-4 mb-lg-0 d-inline-block"> | |
| 562 <a href="/login?return_to=https%3A%2F%2Fgithub.com%2FGlogobyte%2FisomiR_tools%2Fblob%2Fmain%2FREADME.md" | |
| 563 class="HeaderMenu-link flex-shrink-0 no-underline" | |
| 564 data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/Glogobyte/isomiR_tools/blob/main/README.md","user_id":null}}" data-hydro-click-hmac="8b29456fe52d52060d3773bc1ef662577aa2a485ec748664cc6a54d9c6f917cf" | |
| 565 data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in"> | |
| 566 Sign in | |
| 567 </a> | |
| 568 </div> | |
| 569 | |
| 570 <a href="/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fblob%2Fshow&source=header-repo&source_repo=Glogobyte%2FisomiR_tools" | |
| 571 class="HeaderMenu-link flex-shrink-0 d-inline-block no-underline border color-border-default rounded px-2 py-1" | |
| 572 data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/Glogobyte/isomiR_tools/blob/main/README.md","user_id":null}}" data-hydro-click-hmac="8b29456fe52d52060d3773bc1ef662577aa2a485ec748664cc6a54d9c6f917cf" | |
| 573 data-hydro-click="{"event_type":"analytics.event","payload":{"category":"Sign up","action":"click to sign up for account","label":"ref_page:/<user-name>/<repo-name>/blob/show;ref_cta:Sign up;ref_loc:header logged out","originating_url":"https://github.com/Glogobyte/isomiR_tools/blob/main/README.md","user_id":null}}" data-hydro-click-hmac="10b5589e3d935965ad52ca5d4bf93859e37d170f4f71e7efd5ec52c09a6e8b19" | |
| 574 > | |
| 575 Sign up | |
| 576 </a> | |
| 577 </div> | |
| 578 </div> | |
| 579 </div> | |
| 580 </header> | |
| 581 | |
| 582 </div> | |
| 583 | |
| 584 <div id="start-of-content" class="show-on-focus"></div> | |
| 585 | |
| 586 | |
| 587 | |
| 588 | |
| 589 | |
| 590 | |
| 591 <div data-pjax-replace id="js-flash-container"> | |
| 592 | |
| 593 | |
| 594 <template class="js-flash-template"> | |
| 595 <div class="flash flash-full {{ className }}"> | |
| 596 <div class=" px-2" > | |
| 597 <button class="flash-close js-flash-close" type="button" aria-label="Dismiss this message"> | |
| 598 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x"> | |
| 599 <path fill-rule="evenodd" d="M3.72 3.72a.75.75 0 011.06 0L8 6.94l3.22-3.22a.75.75 0 111.06 1.06L9.06 8l3.22 3.22a.75.75 0 11-1.06 1.06L8 9.06l-3.22 3.22a.75.75 0 01-1.06-1.06L6.94 8 3.72 4.78a.75.75 0 010-1.06z"></path> | |
| 600 </svg> | |
| 601 </button> | |
| 602 | |
| 603 <div>{{ message }}</div> | |
| 604 | |
| 605 </div> | |
| 606 </div> | |
| 607 </template> | |
| 608 </div> | |
| 609 | |
| 610 | |
| 611 | |
| 612 | |
| 613 <include-fragment class="js-notification-shelf-include-fragment" data-base-src="https://github.com/notifications/beta/shelf"></include-fragment> | |
| 614 | |
| 615 | |
| 616 | |
| 617 | |
| 618 | |
| 619 <div | |
| 620 class="application-main " | |
| 621 data-commit-hovercards-enabled | |
| 622 data-discussion-hovercards-enabled | |
| 623 data-issue-and-pr-hovercards-enabled | |
| 624 > | |
| 625 <div itemscope itemtype="http://schema.org/SoftwareSourceCode" class=""> | |
| 626 <main id="js-repo-pjax-container" data-pjax-container > | |
| 627 | |
| 628 | |
| 629 | |
| 630 | |
| 631 | |
| 632 | |
| 633 | |
| 634 <include-fragment src="/orgs/Glogobyte/survey_banner"> | |
| 635 </include-fragment> | |
| 636 | |
| 637 | |
| 638 | |
| 639 <div id="repository-container-header" class="pt-3 hide-full-screen mb-5" style="background-color: var(--color-page-header-bg);" data-pjax-replace> | |
| 640 | |
| 641 <div class="d-flex mb-3 px-3 px-md-4 px-lg-5"> | |
| 642 | |
| 643 <div class="flex-auto min-width-0 width-fit mr-3"> | |
| 644 <h1 class=" d-flex flex-wrap flex-items-center wb-break-word f3 text-normal"> | |
| 645 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo color-icon-secondary mr-2"> | |
| 646 <path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path> | |
| 647 </svg> | |
| 648 <span class="author flex-self-stretch" itemprop="author"> | |
| 649 <a class="url fn" rel="author" data-hovercard-type="user" data-hovercard-url="/users/Glogobyte/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="/Glogobyte">Glogobyte</a> | |
| 650 </span> | |
| 651 <span class="mx-1 flex-self-stretch color-text-secondary">/</span> | |
| 652 <strong itemprop="name" class="mr-2 flex-self-stretch"> | |
| 653 <a data-pjax="#js-repo-pjax-container" href="/Glogobyte/isomiR_tools">isomiR_tools</a> | |
| 654 </strong> | |
| 655 | |
| 656 <span></span><span class="Label Label--secondary v-align-middle mr-1">Public</span> | |
| 657 </h1> | |
| 658 | |
| 659 </div> | |
| 660 | |
| 661 <ul class="pagehead-actions flex-shrink-0 d-none d-md-inline" style="padding: 2px 0;"> | |
| 662 | |
| 663 <li> | |
| 664 <a class="tooltipped tooltipped-s btn btn-sm" aria-label="You must be signed in to change notification settings" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","originating_url":"https://github.com/Glogobyte/isomiR_tools/blob/main/README.md","user_id":null}}" data-hydro-click-hmac="8a1427e0c2e588020f78dcdc1c627d9b968cf8dcc1784c2b6debe73f693bcba6" href="/login?return_to=%2FGlogobyte%2FisomiR_tools"> | |
| 665 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-bell"> | |
| 666 <path d="M8 16a2 2 0 001.985-1.75c.017-.137-.097-.25-.235-.25h-3.5c-.138 0-.252.113-.235.25A2 2 0 008 16z"></path><path fill-rule="evenodd" d="M8 1.5A3.5 3.5 0 004.5 5v2.947c0 .346-.102.683-.294.97l-1.703 2.556a.018.018 0 00-.003.01l.001.006c0 .002.002.004.004.006a.017.017 0 00.006.004l.007.001h10.964l.007-.001a.016.016 0 00.006-.004.016.016 0 00.004-.006l.001-.007a.017.017 0 00-.003-.01l-1.703-2.554a1.75 1.75 0 01-.294-.97V5A3.5 3.5 0 008 1.5zM3 5a5 5 0 0110 0v2.947c0 .05.015.098.042.139l1.703 2.555A1.518 1.518 0 0113.482 13H2.518a1.518 1.518 0 01-1.263-2.36l1.703-2.554A.25.25 0 003 7.947V5z"></path> | |
| 667 </svg> | |
| 668 Notifications | |
| 669 </a> | |
| 670 </li> | |
| 671 | |
| 672 <li> | |
| 673 <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to star a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":323269699,"auth_type":"LOG_IN","originating_url":"https://github.com/Glogobyte/isomiR_tools/blob/main/README.md","user_id":null}}" data-hydro-click-hmac="8d7d6b826a32ef126a9e4d10300085e838ff2bfef122bb94d954537f5a83f4df" href="/login?return_to=%2FGlogobyte%2FisomiR_tools"> | |
| 674 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-star v-align-text-bottom mr-1"> | |
| 675 <path fill-rule="evenodd" d="M8 .25a.75.75 0 01.673.418l1.882 3.815 4.21.612a.75.75 0 01.416 1.279l-3.046 2.97.719 4.192a.75.75 0 01-1.088.791L8 12.347l-3.766 1.98a.75.75 0 01-1.088-.79l.72-4.194L.818 6.374a.75.75 0 01.416-1.28l4.21-.611L7.327.668A.75.75 0 018 .25zm0 2.445L6.615 5.5a.75.75 0 01-.564.41l-3.097.45 2.24 2.184a.75.75 0 01.216.664l-.528 3.084 2.769-1.456a.75.75 0 01.698 0l2.77 1.456-.53-3.084a.75.75 0 01.216-.664l2.24-2.183-3.096-.45a.75.75 0 01-.564-.41L8 2.694v.001z"></path> | |
| 676 </svg> | |
| 677 <span data-view-component="true"> | |
| 678 Star | |
| 679 </span></a> | |
| 680 <a class="social-count js-social-count" href="/Glogobyte/isomiR_tools/stargazers" | |
| 681 aria-label="0 users starred this repository"> | |
| 682 0 | |
| 683 </a> | |
| 684 | |
| 685 </li> | |
| 686 | |
| 687 <li> | |
| 688 <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to fork a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"repo details fork button","repository_id":323269699,"auth_type":"LOG_IN","originating_url":"https://github.com/Glogobyte/isomiR_tools/blob/main/README.md","user_id":null}}" data-hydro-click-hmac="0da1214ca99b40c2ec3035e5eb2bb1b466a0fb2832eaa130300f6566d504e451" href="/login?return_to=%2FGlogobyte%2FisomiR_tools"> | |
| 689 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo-forked"> | |
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| 691 </svg> | |
| 692 Fork | |
| 693 </a> | |
| 694 <a href="/Glogobyte/isomiR_tools/network/members" class="social-count" | |
| 695 aria-label="0 users forked this repository"> | |
| 696 0 | |
| 697 </a> | |
| 698 </li> | |
| 699 | |
| 700 <li> | |
| 701 | |
| 702 | |
| 703 </li> | |
| 704 </ul> | |
| 705 | |
| 706 </div> | |
| 707 | |
| 708 <div id="responsive-meta-container" data-pjax-replace> | |
| 709 </div> | |
| 710 | |
| 711 | |
| 712 | |
| 713 <nav data-pjax="#js-repo-pjax-container" aria-label="Repository" data-view-component="true" class="js-repo-nav js-sidenav-container-pjax js-responsive-underlinenav overflow-hidden UnderlineNav px-3 px-md-4 px-lg-5"> | |
| 714 | |
| 715 <ul data-view-component="true" class="UnderlineNav-body list-style-none"> | |
| 716 <li data-view-component="true" class="d-inline-flex"> | |
| 717 <a id="code-tab" href="/Glogobyte/isomiR_tools" data-tab-item="i0code-tab" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches repo_packages repo_deployments /Glogobyte/isomiR_tools" data-hotkey="g c" data-ga-click="Repository, Navigation click, Code tab" data-pjax="#repo-content-pjax-container" aria-current="page" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item selected"> | |
| 718 | |
| 719 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-code UnderlineNav-octicon d-none d-sm-inline"> | |
| 720 <path fill-rule="evenodd" d="M4.72 3.22a.75.75 0 011.06 1.06L2.06 8l3.72 3.72a.75.75 0 11-1.06 1.06L.47 8.53a.75.75 0 010-1.06l4.25-4.25zm6.56 0a.75.75 0 10-1.06 1.06L13.94 8l-3.72 3.72a.75.75 0 101.06 1.06l4.25-4.25a.75.75 0 000-1.06l-4.25-4.25z"></path> | |
| 721 </svg> | |
| 722 <span data-content="Code">Code</span> | |
| 723 <span title="Not available" data-view-component="true" class="Counter"></span> | |
| 724 | |
| 725 | |
| 726 </a></li> | |
| 727 <li data-view-component="true" class="d-inline-flex"> | |
| 728 <a id="issues-tab" href="/Glogobyte/isomiR_tools/issues" data-tab-item="i1issues-tab" data-selected-links="repo_issues repo_labels repo_milestones /Glogobyte/isomiR_tools/issues" data-hotkey="g i" data-ga-click="Repository, Navigation click, Issues tab" data-pjax="#repo-content-pjax-container" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> | |
| 729 | |
| 730 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-issue-opened UnderlineNav-octicon d-none d-sm-inline"> | |
| 731 <path d="M8 9.5a1.5 1.5 0 100-3 1.5 1.5 0 000 3z"></path><path fill-rule="evenodd" d="M8 0a8 8 0 100 16A8 8 0 008 0zM1.5 8a6.5 6.5 0 1113 0 6.5 6.5 0 01-13 0z"></path> | |
| 732 </svg> | |
| 733 <span data-content="Issues">Issues</span> | |
| 734 <span title="1" data-view-component="true" class="Counter">1</span> | |
| 735 | |
| 736 | |
| 737 </a></li> | |
| 738 <li data-view-component="true" class="d-inline-flex"> | |
| 739 <a id="pull-requests-tab" href="/Glogobyte/isomiR_tools/pulls" data-tab-item="i2pull-requests-tab" data-selected-links="repo_pulls checks /Glogobyte/isomiR_tools/pulls" data-hotkey="g p" data-ga-click="Repository, Navigation click, Pull requests tab" data-pjax="#repo-content-pjax-container" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> | |
| 740 | |
| 741 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-git-pull-request UnderlineNav-octicon d-none d-sm-inline"> | |
| 742 <path fill-rule="evenodd" d="M7.177 3.073L9.573.677A.25.25 0 0110 .854v4.792a.25.25 0 01-.427.177L7.177 3.427a.25.25 0 010-.354zM3.75 2.5a.75.75 0 100 1.5.75.75 0 000-1.5zm-2.25.75a2.25 2.25 0 113 2.122v5.256a2.251 2.251 0 11-1.5 0V5.372A2.25 2.25 0 011.5 3.25zM11 2.5h-1V4h1a1 1 0 011 1v5.628a2.251 2.251 0 101.5 0V5A2.5 2.5 0 0011 2.5zm1 10.25a.75.75 0 111.5 0 .75.75 0 01-1.5 0zM3.75 12a.75.75 0 100 1.5.75.75 0 000-1.5z"></path> | |
| 743 </svg> | |
| 744 <span data-content="Pull requests">Pull requests</span> | |
| 745 <span title="0" hidden="hidden" data-view-component="true" class="Counter">0</span> | |
| 746 | |
| 747 | |
| 748 </a></li> | |
| 749 <li data-view-component="true" class="d-inline-flex"> | |
| 750 <a id="actions-tab" href="/Glogobyte/isomiR_tools/actions" data-tab-item="i3actions-tab" data-selected-links="repo_actions /Glogobyte/isomiR_tools/actions" data-hotkey="g a" data-ga-click="Repository, Navigation click, Actions tab" data-pjax="#repo-content-pjax-container" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> | |
| 751 | |
| 752 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-play UnderlineNav-octicon d-none d-sm-inline"> | |
| 753 <path fill-rule="evenodd" d="M1.5 8a6.5 6.5 0 1113 0 6.5 6.5 0 01-13 0zM8 0a8 8 0 100 16A8 8 0 008 0zM6.379 5.227A.25.25 0 006 5.442v5.117a.25.25 0 00.379.214l4.264-2.559a.25.25 0 000-.428L6.379 5.227z"></path> | |
| 754 </svg> | |
| 755 <span data-content="Actions">Actions</span> | |
| 756 <span title="Not available" data-view-component="true" class="Counter"></span> | |
| 757 | |
| 758 | |
| 759 </a></li> | |
| 760 <li data-view-component="true" class="d-inline-flex"> | |
| 761 <a id="projects-tab" href="/Glogobyte/isomiR_tools/projects" data-tab-item="i4projects-tab" data-selected-links="repo_projects new_repo_project repo_project /Glogobyte/isomiR_tools/projects" data-hotkey="g b" data-ga-click="Repository, Navigation click, Projects tab" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> | |
| 762 | |
| 763 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project UnderlineNav-octicon d-none d-sm-inline"> | |
| 764 <path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path> | |
| 765 </svg> | |
| 766 <span data-content="Projects">Projects</span> | |
| 767 <span title="0" hidden="hidden" data-view-component="true" class="Counter">0</span> | |
| 768 | |
| 769 | |
| 770 </a></li> | |
| 771 <li data-view-component="true" class="d-inline-flex"> | |
| 772 <a id="wiki-tab" href="/Glogobyte/isomiR_tools/wiki" data-tab-item="i5wiki-tab" data-selected-links="repo_wiki /Glogobyte/isomiR_tools/wiki" data-hotkey="g w" data-ga-click="Repository, Navigation click, Wikis tab" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> | |
| 773 | |
| 774 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-book UnderlineNav-octicon d-none d-sm-inline"> | |
| 775 <path fill-rule="evenodd" d="M0 1.75A.75.75 0 01.75 1h4.253c1.227 0 2.317.59 3 1.501A3.744 3.744 0 0111.006 1h4.245a.75.75 0 01.75.75v10.5a.75.75 0 01-.75.75h-4.507a2.25 2.25 0 00-1.591.659l-.622.621a.75.75 0 01-1.06 0l-.622-.621A2.25 2.25 0 005.258 13H.75a.75.75 0 01-.75-.75V1.75zm8.755 3a2.25 2.25 0 012.25-2.25H14.5v9h-3.757c-.71 0-1.4.201-1.992.572l.004-7.322zm-1.504 7.324l.004-5.073-.002-2.253A2.25 2.25 0 005.003 2.5H1.5v9h3.757a3.75 3.75 0 011.994.574z"></path> | |
| 776 </svg> | |
| 777 <span data-content="Wiki">Wiki</span> | |
| 778 <span title="Not available" data-view-component="true" class="Counter"></span> | |
| 779 | |
| 780 | |
| 781 </a></li> | |
| 782 <li data-view-component="true" class="d-inline-flex"> | |
| 783 <a id="security-tab" href="/Glogobyte/isomiR_tools/security" data-tab-item="i6security-tab" data-selected-links="security overview alerts policy token_scanning code_scanning /Glogobyte/isomiR_tools/security" data-hotkey="g s" data-ga-click="Repository, Navigation click, Security tab" data-pjax="#repo-content-pjax-container" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> | |
| 784 | |
| 785 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-shield UnderlineNav-octicon d-none d-sm-inline"> | |
| 786 <path fill-rule="evenodd" d="M7.467.133a1.75 1.75 0 011.066 0l5.25 1.68A1.75 1.75 0 0115 3.48V7c0 1.566-.32 3.182-1.303 4.682-.983 1.498-2.585 2.813-5.032 3.855a1.7 1.7 0 01-1.33 0c-2.447-1.042-4.049-2.357-5.032-3.855C1.32 10.182 1 8.566 1 7V3.48a1.75 1.75 0 011.217-1.667l5.25-1.68zm.61 1.429a.25.25 0 00-.153 0l-5.25 1.68a.25.25 0 00-.174.238V7c0 1.358.275 2.666 1.057 3.86.784 1.194 2.121 2.34 4.366 3.297a.2.2 0 00.154 0c2.245-.956 3.582-2.104 4.366-3.298C13.225 9.666 13.5 8.36 13.5 7V3.48a.25.25 0 00-.174-.237l-5.25-1.68zM9 10.5a1 1 0 11-2 0 1 1 0 012 0zm-.25-5.75a.75.75 0 10-1.5 0v3a.75.75 0 001.5 0v-3z"></path> | |
| 787 </svg> | |
| 788 <span data-content="Security">Security</span> | |
| 789 <include-fragment src="/Glogobyte/isomiR_tools/security/overall-count" accept="text/fragment+html"></include-fragment> | |
| 790 | |
| 791 | |
| 792 </a></li> | |
| 793 <li data-view-component="true" class="d-inline-flex"> | |
| 794 <a id="insights-tab" href="/Glogobyte/isomiR_tools/pulse" data-tab-item="i7insights-tab" data-selected-links="repo_graphs repo_contributors dependency_graph dependabot_updates pulse people community /Glogobyte/isomiR_tools/pulse" data-ga-click="Repository, Navigation click, Insights tab" data-view-component="true" class="UnderlineNav-item hx_underlinenav-item no-wrap js-responsive-underlinenav-item js-selected-navigation-item"> | |
| 795 | |
| 796 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-graph UnderlineNav-octicon d-none d-sm-inline"> | |
| 797 <path fill-rule="evenodd" d="M1.5 1.75a.75.75 0 00-1.5 0v12.5c0 .414.336.75.75.75h14.5a.75.75 0 000-1.5H1.5V1.75zm14.28 2.53a.75.75 0 00-1.06-1.06L10 7.94 7.53 5.47a.75.75 0 00-1.06 0L3.22 8.72a.75.75 0 001.06 1.06L7 7.06l2.47 2.47a.75.75 0 001.06 0l5.25-5.25z"></path> | |
| 798 </svg> | |
| 799 <span data-content="Insights">Insights</span> | |
| 800 <span title="Not available" data-view-component="true" class="Counter"></span> | |
| 801 | |
| 802 | |
| 803 </a></li> | |
| 804 </ul> | |
| 805 <div style="visibility:hidden;" data-view-component="true" class="UnderlineNav-actions js-responsive-underlinenav-overflow position-absolute pr-3 pr-md-4 pr-lg-5 right-0"> <details data-view-component="true" class="details-overlay details-reset position-relative"> | |
| 806 <summary role="button" data-view-component="true"> <div class="UnderlineNav-item mr-0 border-0"> | |
| 807 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-kebab-horizontal"> | |
| 808 <path d="M8 9a1.5 1.5 0 100-3 1.5 1.5 0 000 3zM1.5 9a1.5 1.5 0 100-3 1.5 1.5 0 000 3zm13 0a1.5 1.5 0 100-3 1.5 1.5 0 000 3z"></path> | |
| 809 </svg> | |
| 810 <span class="sr-only">More</span> | |
| 811 </div> | |
| 812 </summary> | |
| 813 <div data-view-component="true"> <details-menu role="menu" data-view-component="true" class="dropdown-menu dropdown-menu-sw"> | |
| 814 | |
| 815 <ul> | |
| 816 <li data-menu-item="i0code-tab" hidden> | |
| 817 <a role="menuitem" class="js-selected-navigation-item selected dropdown-item" aria-current="page" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches repo_packages repo_deployments /Glogobyte/isomiR_tools" href="/Glogobyte/isomiR_tools"> | |
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| 820 <li data-menu-item="i1issues-tab" hidden> | |
| 821 <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_issues repo_labels repo_milestones /Glogobyte/isomiR_tools/issues" href="/Glogobyte/isomiR_tools/issues"> | |
| 822 Issues | |
| 823 </a> </li> | |
| 824 <li data-menu-item="i2pull-requests-tab" hidden> | |
| 825 <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_pulls checks /Glogobyte/isomiR_tools/pulls" href="/Glogobyte/isomiR_tools/pulls"> | |
| 826 Pull requests | |
| 827 </a> </li> | |
| 828 <li data-menu-item="i3actions-tab" hidden> | |
| 829 <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_actions /Glogobyte/isomiR_tools/actions" href="/Glogobyte/isomiR_tools/actions"> | |
| 830 Actions | |
| 831 </a> </li> | |
| 832 <li data-menu-item="i4projects-tab" hidden> | |
| 833 <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_projects new_repo_project repo_project /Glogobyte/isomiR_tools/projects" href="/Glogobyte/isomiR_tools/projects"> | |
| 834 Projects | |
| 835 </a> </li> | |
| 836 <li data-menu-item="i5wiki-tab" hidden> | |
| 837 <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_wiki /Glogobyte/isomiR_tools/wiki" href="/Glogobyte/isomiR_tools/wiki"> | |
| 838 Wiki | |
| 839 </a> </li> | |
| 840 <li data-menu-item="i6security-tab" hidden> | |
| 841 <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="security overview alerts policy token_scanning code_scanning /Glogobyte/isomiR_tools/security" href="/Glogobyte/isomiR_tools/security"> | |
| 842 Security | |
| 843 </a> </li> | |
| 844 <li data-menu-item="i7insights-tab" hidden> | |
| 845 <a role="menuitem" class="js-selected-navigation-item dropdown-item" data-selected-links="repo_graphs repo_contributors dependency_graph dependabot_updates pulse people community /Glogobyte/isomiR_tools/pulse" href="/Glogobyte/isomiR_tools/pulse"> | |
| 846 Insights | |
| 847 </a> </li> | |
| 848 </ul> | |
| 849 | |
| 850 </details-menu></div> | |
| 851 </details></div> | |
| 852 </nav> | |
| 853 </div> | |
| 854 | |
| 855 | |
| 856 | |
| 857 <div class="clearfix new-discussion-timeline container-xl px-3 px-md-4 px-lg-5"> | |
| 858 <div id="repo-content-pjax-container" class="repository-content " > | |
| 859 | |
| 860 | |
| 861 | |
| 862 | |
| 863 | |
| 864 | |
| 865 | |
| 866 | |
| 867 <div> | |
| 868 | |
| 869 | |
| 870 | |
| 871 <a class="d-none js-permalink-shortcut" data-hotkey="y" href="/Glogobyte/isomiR_tools/blob/9a13fbd2e9b9f2cfaa39d2d3ddd7b2adf56423b7/README.md">Permalink</a> | |
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| 875 <div class="d-flex flex-items-start flex-shrink-0 pb-3 flex-wrap flex-md-nowrap flex-justify-between flex-md-justify-start"> | |
| 876 | |
| 877 <div class="position-relative"> | |
| 878 <details class="details-reset details-overlay mr-0 mb-0 " id="branch-select-menu"> | |
| 879 <summary class="btn css-truncate" | |
| 880 data-hotkey="w" | |
| 881 title="Switch branches or tags"> | |
| 882 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-git-branch"> | |
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| 884 </svg> | |
| 885 <span class="css-truncate-target" data-menu-button>main</span> | |
| 886 <span class="dropdown-caret"></span> | |
| 887 </summary> | |
| 888 | |
| 889 | |
| 890 <div class="SelectMenu"> | |
| 891 <div class="SelectMenu-modal"> | |
| 892 <header class="SelectMenu-header"> | |
| 893 <span class="SelectMenu-title">Switch branches/tags</span> | |
| 894 <button class="SelectMenu-closeButton" type="button" data-toggle-for="branch-select-menu"><svg aria-label="Close menu" aria-hidden="false" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x"> | |
| 895 <path fill-rule="evenodd" d="M3.72 3.72a.75.75 0 011.06 0L8 6.94l3.22-3.22a.75.75 0 111.06 1.06L9.06 8l3.22 3.22a.75.75 0 11-1.06 1.06L8 9.06l-3.22 3.22a.75.75 0 01-1.06-1.06L6.94 8 3.72 4.78a.75.75 0 010-1.06z"></path> | |
| 896 </svg></button> | |
| 897 </header> | |
| 898 | |
| 899 <input-demux data-action="tab-container-change:input-demux#storeInput tab-container-changed:input-demux#updateInput"> | |
| 900 <tab-container class="d-flex flex-column js-branches-tags-tabs" style="min-height: 0;"> | |
| 901 <div class="SelectMenu-filter"> | |
| 902 <input data-target="input-demux.source" | |
| 903 id="context-commitish-filter-field" | |
| 904 class="SelectMenu-input form-control" | |
| 905 aria-owns="ref-list-branches" | |
| 906 data-controls-ref-menu-id="ref-list-branches" | |
| 907 autofocus | |
| 908 autocomplete="off" | |
| 909 aria-label="Filter branches/tags" | |
| 910 placeholder="Filter branches/tags" | |
| 911 type="text" | |
| 912 > | |
| 913 </div> | |
| 914 | |
| 915 <div class="SelectMenu-tabs" role="tablist" data-target="input-demux.control" > | |
| 916 <button class="SelectMenu-tab" type="button" role="tab" aria-selected="true">Branches</button> | |
| 917 <button class="SelectMenu-tab" type="button" role="tab">Tags</button> | |
| 918 </div> | |
| 919 | |
| 920 <div role="tabpanel" id="ref-list-branches" data-filter-placeholder="Filter branches/tags" class="d-flex flex-column flex-auto overflow-auto" tabindex=""> | |
| 921 <ref-selector | |
| 922 type="branch" | |
| 923 data-targets="input-demux.sinks" | |
| 924 data-action=" | |
| 925 input-entered:ref-selector#inputEntered | |
| 926 tab-selected:ref-selector#tabSelected | |
| 927 focus-list:ref-selector#focusFirstListMember | |
| 928 " | |
| 929 query-endpoint="/Glogobyte/isomiR_tools/refs" | |
| 930 | |
| 931 cache-key="v0:1608537841.0" | |
| 932 current-committish="bWFpbg==" | |
| 933 default-branch="bWFpbg==" | |
| 934 name-with-owner="R2xvZ29ieXRlL2lzb21pUl90b29scw==" | |
| 935 prefetch-on-mouseover | |
| 936 > | |
| 937 | |
| 938 <template data-target="ref-selector.fetchFailedTemplate"> | |
| 939 <div class="SelectMenu-message" data-index="{{ index }}">Could not load branches</div> | |
| 940 </template> | |
| 941 | |
| 942 <template data-target="ref-selector.noMatchTemplate"> | |
| 943 <div class="SelectMenu-message">Nothing to show</div> | |
| 944 </template> | |
| 945 | |
| 946 | |
| 947 <!-- TODO: this max-height is necessary or else the branch list won't scroll. why? --> | |
| 948 <div data-target="ref-selector.listContainer" role="menu" class="SelectMenu-list " style="max-height: 330px" data-pjax="#repo-content-pjax-container"> | |
| 949 <div class="SelectMenu-loading pt-3 pb-0" aria-label="Menu is loading"> | |
| 950 <svg style="box-sizing: content-box; color: var(--color-icon-primary);" width="32" height="32" viewBox="0 0 16 16" fill="none" data-view-component="true" class="anim-rotate"> | |
| 951 <circle cx="8" cy="8" r="7" stroke="currentColor" stroke-opacity="0.25" stroke-width="2" vector-effect="non-scaling-stroke" /> | |
| 952 <path d="M15 8a7.002 7.002 0 00-7-7" stroke="currentColor" stroke-width="2" stroke-linecap="round" vector-effect="non-scaling-stroke" /> | |
| 953 </svg> | |
| 954 </div> | |
| 955 </div> | |
| 956 | |
| 957 <template data-target="ref-selector.itemTemplate"> | |
| 958 <a href="https://github.com/Glogobyte/isomiR_tools/blob/{{ urlEncodedRefName }}/README.md" class="SelectMenu-item" role="menuitemradio" rel="nofollow" aria-checked="{{ isCurrent }}" data-index="{{ index }}"> | |
| 959 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check SelectMenu-icon SelectMenu-icon--check"> | |
| 960 <path fill-rule="evenodd" d="M13.78 4.22a.75.75 0 010 1.06l-7.25 7.25a.75.75 0 01-1.06 0L2.22 9.28a.75.75 0 011.06-1.06L6 10.94l6.72-6.72a.75.75 0 011.06 0z"></path> | |
| 961 </svg> | |
| 962 <span class="flex-1 css-truncate css-truncate-overflow {{ isFilteringClass }}">{{ refName }}</span> | |
| 963 <span hidden="{{ isNotDefault }}" class="Label Label--secondary flex-self-start">default</span> | |
| 964 </a> | |
| 965 </template> | |
| 966 | |
| 967 | |
| 968 <footer class="SelectMenu-footer"><a href="/Glogobyte/isomiR_tools/branches">View all branches</a></footer> | |
| 969 </ref-selector> | |
| 970 | |
| 971 </div> | |
| 972 | |
| 973 <div role="tabpanel" id="tags-menu" data-filter-placeholder="Find a tag" class="d-flex flex-column flex-auto overflow-auto" tabindex="" hidden> | |
| 974 <ref-selector | |
| 975 type="tag" | |
| 976 data-action=" | |
| 977 input-entered:ref-selector#inputEntered | |
| 978 tab-selected:ref-selector#tabSelected | |
| 979 focus-list:ref-selector#focusFirstListMember | |
| 980 " | |
| 981 data-targets="input-demux.sinks" | |
| 982 query-endpoint="/Glogobyte/isomiR_tools/refs" | |
| 983 cache-key="v0:1608537841.0" | |
| 984 current-committish="bWFpbg==" | |
| 985 default-branch="bWFpbg==" | |
| 986 name-with-owner="R2xvZ29ieXRlL2lzb21pUl90b29scw==" | |
| 987 > | |
| 988 | |
| 989 <template data-target="ref-selector.fetchFailedTemplate"> | |
| 990 <div class="SelectMenu-message" data-index="{{ index }}">Could not load tags</div> | |
| 991 </template> | |
| 992 | |
| 993 <template data-target="ref-selector.noMatchTemplate"> | |
| 994 <div class="SelectMenu-message" data-index="{{ index }}">Nothing to show</div> | |
| 995 </template> | |
| 996 | |
| 997 <template data-target="ref-selector.itemTemplate"> | |
| 998 <a href="https://github.com/Glogobyte/isomiR_tools/blob/{{ urlEncodedRefName }}/README.md" class="SelectMenu-item" role="menuitemradio" rel="nofollow" aria-checked="{{ isCurrent }}" data-index="{{ index }}"> | |
| 999 <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-check SelectMenu-icon SelectMenu-icon--check"> | |
| 1000 <path fill-rule="evenodd" d="M13.78 4.22a.75.75 0 010 1.06l-7.25 7.25a.75.75 0 01-1.06 0L2.22 9.28a.75.75 0 011.06-1.06L6 10.94l6.72-6.72a.75.75 0 011.06 0z"></path> | |
| 1001 </svg> | |
| 1002 <span class="flex-1 css-truncate css-truncate-overflow {{ isFilteringClass }}">{{ refName }}</span> | |
| 1003 <span hidden="{{ isNotDefault }}" class="Label Label--secondary flex-self-start">default</span> | |
| 1004 </a> | |
| 1005 </template> | |
| 1006 | |
| 1007 | |
| 1008 <div data-target="ref-selector.listContainer" role="menu" class="SelectMenu-list" style="max-height: 330px" data-pjax="#repo-content-pjax-container"> | |
| 1009 <div class="SelectMenu-loading pt-3 pb-0" aria-label="Menu is loading"> | |
| 1010 <svg style="box-sizing: content-box; color: var(--color-icon-primary);" width="32" height="32" viewBox="0 0 16 16" fill="none" data-view-component="true" class="anim-rotate"> | |
| 1011 <circle cx="8" cy="8" r="7" stroke="currentColor" stroke-opacity="0.25" stroke-width="2" vector-effect="non-scaling-stroke" /> | |
| 1012 <path d="M15 8a7.002 7.002 0 00-7-7" stroke="currentColor" stroke-width="2" stroke-linecap="round" vector-effect="non-scaling-stroke" /> | |
| 1013 </svg> | |
| 1014 </div> | |
| 1015 </div> | |
| 1016 <footer class="SelectMenu-footer"><a href="/Glogobyte/isomiR_tools/tags">View all tags</a></footer> | |
| 1017 </ref-selector> | |
| 1018 </div> | |
| 1019 </tab-container> | |
| 1020 </input-demux> | |
| 1021 </div> | |
| 1022 </div> | |
| 1023 | |
| 1024 </details> | |
| 1025 | |
| 1026 </div> | |
| 1027 | |
| 1028 <h2 id="blob-path" class="breadcrumb flex-auto flex-self-center min-width-0 text-normal mx-2 width-full width-md-auto flex-order-1 flex-md-order-none mt-3 mt-md-0"> | |
| 1029 <span class="js-repo-root text-bold"><span class="js-path-segment d-inline-block wb-break-all"><a data-pjax="#repo-content-pjax-container" href="/Glogobyte/isomiR_tools"><span>isomiR_tools</span></a></span></span><span class="separator">/</span><strong class="final-path">README.md</strong> | |
| 1030 </h2> | |
| 1031 <a href="/Glogobyte/isomiR_tools/find/main" | |
| 1032 class="js-pjax-capture-input btn mr-2 d-none d-md-block" | |
| 1033 data-pjax | |
| 1034 data-hotkey="t"> | |
| 1035 Go to file | |
| 1036 </a> | |
| 1037 | |
| 1038 <details id="blob-more-options-details" data-view-component="true" class="details-overlay details-reset position-relative"> | |
| 1039 <summary role="button" data-view-component="true" class="btn"> | |
| 1040 | |
| 1041 <svg aria-label="More options" role="img" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-kebab-horizontal"> | |
| 1042 <path d="M8 9a1.5 1.5 0 100-3 1.5 1.5 0 000 3zM1.5 9a1.5 1.5 0 100-3 1.5 1.5 0 000 3zm13 0a1.5 1.5 0 100-3 1.5 1.5 0 000 3z"></path> | |
| 1043 </svg> | |
| 1044 | |
| 1045 | |
| 1046 | |
| 1047 </summary> | |
| 1048 <div data-view-component="true"> <ul class="dropdown-menu dropdown-menu-sw"> | |
| 1049 <li class="d-block d-md-none"> | |
| 1050 <a class="dropdown-item d-flex flex-items-baseline" data-hydro-click="{"event_type":"repository.click","payload":{"target":"FIND_FILE_BUTTON","repository_id":323269699,"originating_url":"https://github.com/Glogobyte/isomiR_tools/blob/main/README.md","user_id":null}}" data-hydro-click-hmac="0967f838d23804cca91cf836ae397b8423828a55f6669275f803f1964c55889b" data-ga-click="Repository, find file, location:repo overview" data-hotkey="t" data-pjax="true" href="/Glogobyte/isomiR_tools/find/main"> | |
| 1051 <span class="flex-auto">Go to file</span> | |
| 1052 <span class="text-small color-text-secondary" aria-hidden="true">T</span> | |
| 1053 </a> </li> | |
| 1054 <li data-toggle-for="blob-more-options-details"> | |
| 1055 <button data-toggle-for="jumpto-line-details-dialog" type="button" data-view-component="true" class="dropdown-item btn-link"> | |
| 1056 | |
| 1057 | |
| 1058 <span class="d-flex flex-items-baseline"> | |
| 1059 <span class="flex-auto">Go to line</span> | |
| 1060 <span class="text-small color-text-secondary" aria-hidden="true">L</span> | |
| 1061 </span> | |
| 1062 | |
| 1063 | |
| 1064 | |
| 1065 </button> </li> | |
| 1066 <li class="dropdown-divider" role="none"></li> | |
| 1067 <li> | |
| 1068 <clipboard-copy data-toggle-for="blob-more-options-details" aria-label="Copy path" value="README.md" data-view-component="true" class="dropdown-item cursor-pointer"> | |
| 1069 | |
| 1070 Copy path | |
| 1071 | |
| 1072 </clipboard-copy> </li> | |
| 1073 <li> | |
| 1074 <clipboard-copy data-toggle-for="blob-more-options-details" aria-label="Copy permalink" value="https://github.com/Glogobyte/isomiR_tools/blob/9a13fbd2e9b9f2cfaa39d2d3ddd7b2adf56423b7/README.md" data-view-component="true" class="dropdown-item cursor-pointer"> | |
| 1075 | |
| 1076 <span class="d-flex flex-items-baseline"> | |
| 1077 <span class="flex-auto">Copy permalink</span> | |
| 1078 </span> | |
| 1079 | |
| 1080 </clipboard-copy> </li> | |
| 1081 </ul> | |
| 1082 </div> | |
| 1083 </details> </div> | |
| 1084 | |
| 1085 | |
| 1086 | |
| 1087 | |
| 1088 <div class="Box d-flex flex-column flex-shrink-0 mb-3"> | |
| 1089 <include-fragment src="/Glogobyte/isomiR_tools/contributors/main/README.md" class="commit-loader"> | |
| 1090 <div class="Box-header d-flex flex-items-center"> | |
| 1091 <div class="Skeleton avatar avatar-user flex-shrink-0 ml-n1 mr-n1 mt-n1 mb-n1" style="width:24px;height:24px;"></div> | |
| 1092 <div class="Skeleton Skeleton--text col-5 ml-2"> </div> | |
| 1093 </div> | |
| 1094 | |
| 1095 <div class="Box-body d-flex flex-items-center" > | |
| 1096 <div class="Skeleton Skeleton--text col-1"> </div> | |
| 1097 <span class="color-text-danger h6 loader-error">Cannot retrieve contributors at this time</span> | |
| 1098 </div> | |
| 1099 </include-fragment> </div> | |
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| 1101 | |
| 1102 | |
| 1103 | |
| 1104 | |
| 1105 | |
| 1106 | |
| 1107 | |
| 1108 | |
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| 1110 "> | |
| 1111 | |
| 1112 <div | |
| 1113 class="Box-header py-2 pr-2 d-flex flex-shrink-0 flex-md-row flex-items-center" | |
| 1114 | |
| 1115 > | |
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| 1145 <a href="/Glogobyte/isomiR_tools/raw/main/README.md" id="raw-url" role="button" data-view-component="true" class="btn-sm btn BtnGroup-item"> | |
| 1146 | |
| 1147 Raw | |
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| 1151 <a href="/Glogobyte/isomiR_tools/blame/main/README.md" data-hotkey="b" role="button" data-view-component="true" class="js-update-url-with-hash btn-sm btn BtnGroup-item"> | |
| 1152 | |
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| 1159 <div> | |
| 1160 <a class="btn-octicon tooltipped tooltipped-nw js-remove-unless-platform" | |
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| 1222 <div id="readme" class="Box-body readme blob js-code-block-container p-5 p-xl-6 gist-border-0"> | |
| 1223 <article class="markdown-body entry-content container-lg" itemprop="text"><h2><a id="user-content-isomir-tools" class="anchor" aria-hidden="true" href="#isomir-tools"><svg class="octicon octicon-link" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M7.775 3.275a.75.75 0 001.06 1.06l1.25-1.25a2 2 0 112.83 2.83l-2.5 2.5a2 2 0 01-2.83 0 .75.75 0 00-1.06 1.06 3.5 3.5 0 004.95 0l2.5-2.5a3.5 3.5 0 00-4.95-4.95l-1.25 1.25zm-4.69 9.64a2 2 0 010-2.83l2.5-2.5a2 2 0 012.83 0 .75.75 0 001.06-1.06 3.5 3.5 0 00-4.95 0l-2.5 2.5a3.5 3.5 0 004.95 4.95l1.25-1.25a.75.75 0 00-1.06-1.06l-1.25 1.25a2 2 0 01-2.83 0z"></path></svg></a>isomiR tools</h2> | |
| 1224 <p>List of tools updated 01.01.2021</p> | |
| 1225 <table> | |
| 1226 <thead> | |
| 1227 <tr> | |
| 1228 <th align="center">Tool name</th> | |
| 1229 <th align="center">Type</th> | |
| 1230 <th>Tool Features</th> | |
| 1231 <th align="center">Year</th> | |
| 1232 <th align="center">Authors</th> | |
| 1233 <th align="center">Journal<br>URL<br>Reference<br>(DOI number)</th> | |
| 1234 </tr> | |
| 1235 </thead> | |
| 1236 <tbody> | |
| 1237 <tr> | |
| 1238 <td align="center">miRMaster</td> | |
| 1239 <td align="center">Web</td> | |
| 1240 <td>● Quantification of miRNAs and non-coding RNAs<br>● Discovering of new miRNAs and isomiRs<br>● Discovering of new miRNAs and isomiRs<br>● Quantification on known and novel miRNA with miRDeep2<br>● Preprocessing (adapter trimming, quality filtering, read collapsing)<br>● Mapping with Bowtie to various ncRNA (rRNAs, snRNAs, snoRNAs, scaRNAs, lincRNAs, piRNAs, tRNAs)<br>● Exogenous miRNAs mapping with bacteria and viruses<br>● Used for validation used samples from lung and blood samples from PAX blood RNA pool</td> | |
| 1241 <td align="center">2017</td> | |
| 1242 <td align="center">Tobias Fehlmann et all.</td> | |
| 1243 <td align="center">Nucleic Acids Research<br><br>Open Access<br><br><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5587802/" rel="nofollow">[URL]</a><br><br>10.1093/nar/ gkx595</td> | |
| 1244 </tr> | |
| 1245 <tr> | |
| 1246 <td align="center">QuickMIRSeq</td> | |
| 1247 <td align="center">Linux</td> | |
| 1248 <td>● Quantify miRNAs and isomiRs<br>● Avoid of multiple mapping issue of reads of identical sequences<br>● Clustering and grouping of identical and similar sequences<br>● Trimming adapters, collapsing, joint mapping with Bowtie<br>● Remapping reads with mismatches to a reference genome to further reduce the number of false hits</td> | |
| 1249 <td align="center">2017</td> | |
| 1250 <td align="center">Shanrong Zhao et all.</td> | |
| 1251 <td align="center">BMC Bioinformatics<br><br>Open Access<br><br><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5359966/" rel="nofollow">[URL]</a><br><br>10.1186/s12859 -017-1601-4</td> | |
| 1252 </tr> | |
| 1253 <tr> | |
| 1254 <td align="center">iMir</td> | |
| 1255 <td align="center">Linux<br>Mac</td> | |
| 1256 <td>● Identification of miRNAs and other sncRNAs, such as piRNAs<br>● Adapter trimming, quality filtering, differential expression analysis<br>● Analysis of sncRNAs and novel miRNAs<br>● Identification of isomirs using miRanalyzer<br>● Using miRAnalyzer and miRDeep2<br>● Statistical analysis to remove low expressed sncRNAs<br>● Differential Expression using Deseq Quantile normalization<br>● Target Prediction using TargetScan and miRanda</td> | |
| 1257 <td align="center">2013</td> | |
| 1258 <td align="center">Giorgio Giurato et all.</td> | |
| 1259 <td align="center">BMC<br>Bioinformatics<br><br>Open access<br><br><a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-362" rel="nofollow">[URL]</a><br><br>10.1186/1471 -2105-14-362</td> | |
| 1260 </tr> | |
| 1261 <tr> | |
| 1262 <td align="center">MIR-isomiRExp</td> | |
| 1263 <td align="center">Web</td> | |
| 1264 <td>● Analyze the expression patterns or miRNA/isomer levels<br>● miRNA maturation and processing mechanism at isomiRs levels<br>● Using MirBase DB, mapping with Bowtie<br>● Differential expression using Deseq<br>● Analysis at the isomiR levels based/independent on miRNA locus<br>● Arm-switching analysis</td> | |
| 1265 <td align="center">2016</td> | |
| 1266 <td align="center">Li Guo et all.</td> | |
| 1267 <td align="center">Nature<br><br>Open Access<br><br><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4806314/" rel="nofollow">[URL]</a><br><br>10.1038/ srep23700</td> | |
| 1268 </tr> | |
| 1269 <tr> | |
| 1270 <td align="center">miRNAgFree</td> | |
| 1271 <td align="center">Linux<br>Windows</td> | |
| 1272 <td>● miRNA prediction based on biogenesis features (known 5’ homogeneity) and isomiR duplex forming<br>● Uses the sRNAbench preprocessing</td> | |
| 1273 <td align="center">2017</td> | |
| 1274 <td align="center">EL Aparicio et all.</td> | |
| 1275 <td align="center">BioRxiv<br><br><a href="https://www.biorxiv.org/content/10.1101/193094v1.full" rel="nofollow">[URL]</a><br><br>10.1101/193094</td> | |
| 1276 </tr> | |
| 1277 <tr> | |
| 1278 <td align="center">isomiRID</td> | |
| 1279 <td align="center">Linux<br>Mac</td> | |
| 1280 <td>● Identification of 5’, 3’ and polymorphic isomiRs<br>● Identification of non-templated 5’ or 3’ end and variations<br>● It could be applied to every organism (plants + animals)<br>● Detection of isomiRs with one mismatch<br>● Mapping in pre-miRNAs with Bowtie</td> | |
| 1281 <td align="center">2013</td> | |
| 1282 <td align="center">Luiz Felipe Valter de Oliveira et all.</td> | |
| 1283 <td align="center">Bioinformatics<br><br><a href="https://academic.oup.com/bioinformatics/article/29/20/2521/276800" rel="nofollow">[URL]</a><br><br>10.1093/ bioinformatics/ btt424</td> | |
| 1284 </tr> | |
| 1285 <tr> | |
| 1286 <td align="center">MIRPIPE</td> | |
| 1287 <td align="center">Web</td> | |
| 1288 <td>● Rapid and simple browser-based miRNA homology detection and quantification of miRNAs<br>● Read counts from isomiRs of the same miRNA are combined. <br>● Using FASTX-tollkit, Cutadapt, BLASTN</td> | |
| 1289 <td align="center">2014</td> | |
| 1290 <td align="center">Carsten Kuenne et all.</td> | |
| 1291 <td align="center">Bioinformatics<br><br><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816158/" rel="nofollow">[URL]</a><br><br>10.1093/ bioinformatics/ btu573</td> | |
| 1292 </tr> | |
| 1293 <tr> | |
| 1294 <td align="center">CASMIR</td> | |
| 1295 <td align="center">Standalone<br>Linux</td> | |
| 1296 <td>● Sequence-oriented isomiR annotation which allows unbiased identification of global isomiRs from small sequencing data<br>● Alignment against canonical and precursors from miRBase<br>● Discovering of canonical, 5’, 3’, polymorphic, mixed type, non-templated isomiRs, quantification using miRDeep2<br>● In-house trimming and size filtering<br>● BLAST with in house custom isomiR-BLAST alignment tool<br>● Differential expression performed with a Poisson regression model combined with a quasi-likelihood approach and AUC based on methods of DeLong and Clarke-Pearson</td> | |
| 1297 <td align="center">2018</td> | |
| 1298 <td align="center">Chung Wah Wu et all.</td> | |
| 1299 <td align="center">BMC Genomics<br><br>Open Access<br><br><a href="https://www.ncbi.nlm.nih.gov/pubmed/29801434" rel="nofollow">[URL]</a><br><br>10.1186/s1286 4-018-4794-7</td> | |
| 1300 </tr> | |
| 1301 <tr> | |
| 1302 <td align="center">IsomiR-SEA</td> | |
| 1303 <td align="center">Linux<br>Windows<br>Mac</td> | |
| 1304 <td>● Provide users with a complete and accurate picture of the miRNAs, isomiRs and conserved miRNA:mRNA interaction sites <br>● Provide accurate miRNA and isomiRs expression levels<br>● Use a specialized algorithm for alignment<br>● Evaluates the positions of the encountered mismatches in analyzed tags</td> | |
| 1305 <td align="center">2016</td> | |
| 1306 <td align="center">Gianvito Urgese et all.</td> | |
| 1307 <td align="center">BMC Bioinformatics<br><br><a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-0958-0" rel="nofollow">[URL]</a><br><br>10.1186/s12859 -016-0958-0</td> | |
| 1308 </tr> | |
| 1309 <tr> | |
| 1310 <td align="center">DeAnnIso</td> | |
| 1311 <td align="center">Web</td> | |
| 1312 <td>● Detection and Annotation of IsomiRs from sRNA se- quencing data<br>● Еxtract the differentially expressing isomiRs with isomiRs expression, isomiRs classification from paired or multiple samples<br>● Tissue specific isomiR expression<br>● Using Bowtie and BLAST with miRBase<br>● Normalization with RPM<br>● isomiRs’ classification, 5’ isomiRs, 3’ isomiRs, isomiRs with internal modifications, templated and non-templated <br>● Target analysis and enrichment analysis of isomiRs with miRanda or RNA hybrid</td> | |
| 1313 <td align="center">2016</td> | |
| 1314 <td align="center">Yuanwei Zhang et all.</td> | |
| 1315 <td align="center">Nucleic Acids Research<br><br><a href="https://www.ncbi.nlm.nih.gov/pubmed/27179030" rel="nofollow">[URL]</a><br><br>10.1093/nar/ gkw427</td> | |
| 1316 </tr> | |
| 1317 <tr> | |
| 1318 <td align="center">IsomiRage</td> | |
| 1319 <td align="center">Windows<br>Mac</td> | |
| 1320 <td>● Identification of miRNA variants (canonical miRNAs, templated and non-templated isomiRs)<br>● Detects and groups all 3’-,5’- and trimmed variants <br>● Uses reference sequences from miRBase<br>● Classification of isomiRs according to the type of modification (uridylation, adenylation,etc)<br>● Mapping performed with Bowtie with no mismatches to reference and custom genome<br>● Normalization with RPM and read counts that can be used for comparisons of fold changes and other downstream analyses</td> | |
| 1321 <td align="center">2014</td> | |
| 1322 <td align="center">Muller Heiko et all.</td> | |
| 1323 <td align="center">Frontiers in Bioengineering and Biotechnology<br><br><a href="https://www.frontiersin.org/articles/10.3389/fbioe.2014.00038/full" rel="nofollow">[URL]</a><br><br>10.3389/fbioe. 2014.00038</td> | |
| 1324 </tr> | |
| 1325 <tr> | |
| 1326 <td align="center">QuagmiR</td> | |
| 1327 <td align="center">Standalone<br>Web</td> | |
| 1328 <td>● Designed for the detection and annotation of heterogeneous isomiRs<br>● Provide extensive customization of the process and reference databases according to user’s diverse research needs<br>● Can be used to analyze both private datasets and the public datasets that are available to authorized researchers through the CGC</td> | |
| 1329 <td align="center">2018</td> | |
| 1330 <td align="center">Xavier Bofill-De Ros et all.</td> | |
| 1331 <td align="center">Bioimformatics<br><br><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6499244/" rel="nofollow">[URL]</a><br><br>10.1093/ bioinformatics/ bty843</td> | |
| 1332 </tr> | |
| 1333 <tr> | |
| 1334 <td align="center">Jasmine</td> | |
| 1335 <td align="center">R + Java</td> | |
| 1336 <td>● Identification of isomiR populations.<br>● Propose a comprehensive isomiR nomenclature<br>● Uses curated miRBase annotation.<br>● Adapter trimming (trimmomatic, cutadapt)<br>● Collapsing trimmed reads (fastx_collapser, fastq _to_fasta from FASTX-toolkit), Quality control (FastQC)<br>● Mapping with Bowtie with at least one mismatch<br>● Uses miRBase database</td> | |
| 1337 <td align="center">2019</td> | |
| 1338 <td align="center">Xiangfu Zhong et all.</td> | |
| 1339 <td align="center">Bioinformatics<br><br><a href="https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btz806/5612093" rel="nofollow">[URL]</a><br><br>10.1093/ bioinformatics/ btz806</td> | |
| 1340 </tr> | |
| 1341 <tr> | |
| 1342 <td align="center">CBS-miRSeq</td> | |
| 1343 <td align="center">Linux<br>Docker<br>VM</td> | |
| 1344 <td>● Color-spaced raw reads<br>● Read length distribution, summary of adapter removal, mapping statistics, and raw expression count matrix of known miRNAs.<br>● Using Bowtie with reference genome<br>● Differential expression analysis using Deseq2, EdgeR<br>● Identifies isomiRs using miRspring<br>● Predicts novel miRNA candidates using miRDeep2<br>● Predicts the most consistent miRNA:mRNA unique pairs, using RNAhybrid, miRanda</td> | |
| 1345 <td align="center">2019</td> | |
| 1346 <td align="center">Rupesh K. Kesharwani et all.</td> | |
| 1347 <td align="center">Computers in Biology and Medicine<br><br><a href="https://www.sciencedirect.com/science/article/pii/S001048251930188X" rel="nofollow">[URL]</a><br><br>10.1016/ j.compbiomed. 2019.05.019.</td> | |
| 1348 </tr> | |
| 1349 <tr> | |
| 1350 <td align="center">sRNAtoolbox</td> | |
| 1351 <td align="center">Web</td> | |
| 1352 <td>●Expression profiling of small RNAs, prediction of novel microRNAs, analysis of isomiRs<br>● Differential expression using DESeq, edgeR, and NOISeq<br>● Target prediction onuser-provided input data based on Miranda, PITA and TargetSpy<br>● Visualization of sRNA expression data in a genome context using jBrowse</td> | |
| 1353 <td align="center">2015</td> | |
| 1354 <td align="center">Antonio Rueda et all.</td> | |
| 1355 <td align="center">Nucleic Acids Research<br><br><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489306/pdf/gkv555.pdf" rel="nofollow">[URL]</a><br><br>10.1093/nar/ gkv555</td> | |
| 1356 </tr> | |
| 1357 <tr> | |
| 1358 <td align="center">sRNAnalyzer</td> | |
| 1359 <td align="center">Web</td> | |
| 1360 <td>● miRNA profiling strategies for isomiRs<br>● Detection of potential SNPs in miRNAs<br>● Uses Cutadapt, Printseq, FastX for preprocessing and Bowtie for mapping; MirBase and MirGen DB<br>● Use of LPM (local probability mapping) strategy to increase mapping specificity<br>● Extensive rRNA and tRNA filtering steps to enhance the accuracy of exogenous RNA mapping<br>● Exogenous RNA mapping process using sRNAnalyzer</td> | |
| 1361 <td align="center">2017</td> | |
| 1362 <td align="center">Xiaogang Wu et all.</td> | |
| 1363 <td align="center">Nucleic Acids Research<br><br>Open Access<br><br><a href="https://www.ncbi.nlm.nih.gov/pubmed/29069500" rel="nofollow">[URL]</a><br><br>10.1093/nar/ gkx999</td> | |
| 1364 </tr> | |
| 1365 <tr> | |
| 1366 <td align="center">mirPRo</td> | |
| 1367 <td align="center">Linux</td> | |
| 1368 <td>● Quantify known miRNAs<br>● Predict novel miRNAs and miRNA family expression quantification<br>● IsomiRs identification and categorization<br>● Arm switching detection<br>● Using Novoalign, HTSeq and pre-miRNAs from miRBase<br>● Using DESeq to perform differential expression profile analysis for known and novel mature miRNAs</td> | |
| 1369 <td align="center">2015</td> | |
| 1370 <td align="center">Jieming Shi et all.</td> | |
| 1371 <td align="center">Nature<br><br>Open Access<br><br><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4592965/" rel="nofollow">[URL]</a><br><br>10.1038/ srep14617</td> | |
| 1372 </tr> | |
| 1373 <tr> | |
| 1374 <td align="center">miRge</td> | |
| 1375 <td align="center">Standalone</td> | |
| 1376 <td>● MirGeneDB miRNAs were used to assemble positive clusters (known miRNAs and tRNA, snoRNA, rRNA or mRNA were used to assemble negative clusters (known non-miRNAs)<br>● Identification of isomiRs<br>● Novel miRNA detection <br>● Preprocessing with Cutadapt and mapping (Bowtie)<br>● Using miRbase and miRGen DB<br>● Detection of A-to-I editing</td> | |
| 1377 <td align="center">2015</td> | |
| 1378 <td align="center">Alexander S. Baras et all.</td> | |
| 1379 <td align="center">Plos one<br><br>Open Access<br><br><a href="https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0143066" rel="nofollow">[URL]</a><br><br>10.1371/journal. pone.0143066</td> | |
| 1380 </tr> | |
| 1381 <tr> | |
| 1382 <td align="center">miRDis</td> | |
| 1383 <td align="center">Web</td> | |
| 1384 <td>● Systematic annotation of known miRNAs and other noncoding RNAs based on read mapped regions <br>● Prediction of novel miRNAs and noncoding RNAs through assigning ambiguous reads to unique genome region with well-predicted RNA structure <br>● Detection of candidate exogenous miRNAs transported from dietary species<br>● Using FASTQC, Cutadapt, Bowtie and EdgeR</td> | |
| 1385 <td align="center">2017</td> | |
| 1386 <td align="center">Hanyuan Zhang et all.</td> | |
| 1387 <td align="center">Briefings in Bioinformatics<br><br>Open Access<br><br><a href="https://www.ncbi.nlm.nih.gov/pubmed/28073746" rel="nofollow">[URL]</a><br><br>10.1093/bib/ bbw140</td> | |
| 1388 </tr> | |
| 1389 <tr> | |
| 1390 <td align="center">miRMOD</td> | |
| 1391 <td align="center">Windows</td> | |
| 1392 <td>● Identifies and analyzes miRNA 3’ and 5’ modifications (non-templated additions as well as trimming)<br>● Using Bowtie with reference genome/pre-miRNA<br>● Provides useful statistics about various types of miRNA modifications along with its frequencies.<br>● Target alteration analysis</td> | |
| 1393 <td align="center">2015</td> | |
| 1394 <td align="center">Abhinav Kaushik et all.</td> | |
| 1395 <td align="center">PeerJ<br><br>Open Access<br><br><a href="https://www.ncbi.nlm.nih.gov/pubmed/26623179" rel="nofollow">[URL]</a><br><br>10.7717/ peerj.1332</td> | |
| 1396 </tr> | |
| 1397 <tr> | |
| 1398 <td align="center">mirTools 2.0</td> | |
| 1399 <td align="center">Web</td> | |
| 1400 <td>● Detection of various types of ncRNAs (miRNA, tRNA, snRNA, snoRNA, rRNA and piRNA)<br>● Identify miRNA-targeted genes<br>● Performs functional annotation or miRNA targets (GO, KEGG, PPI)<br>● Detect differentially expressed ncRNAs with RPM and the Bayesian method<br>● Detect novel miRNAs using miRDeep</td> | |
| 1401 <td align="center">2013</td> | |
| 1402 <td align="center">Jinyu Wu et all.</td> | |
| 1403 <td align="center">RNA Biology<br><br><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3849156/" rel="nofollow">[URL]</a><br><br>10.4161/ rna.25193</td> | |
| 1404 </tr> | |
| 1405 <tr> | |
| 1406 <td align="center">Chimira</td> | |
| 1407 <td align="center">Web</td> | |
| 1408 <td>● Sequences are automatically cleaned, trimmed, size selected and mapped directly to miRNA hairpin sequences<br>● Identifies epi-transcriptomic modifications in the input sequences. <br>● Alignment with BLAST to miRbase and differential Expression of miRNAs using Deseq2<br>● Modification profiles of 3’ and 5’ and internal modifications, uridylation, adenylation and internal modifications or variations of the miRNAs.</td> | |
| 1409 <td align="center">2015</td> | |
| 1410 <td align="center">Dimitrios M. Vitsios et all.</td> | |
| 1411 <td align="center">Bioinformatics<br><br><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4595902/" rel="nofollow">[URL]</a><br><br>10.1093/ bioinformatics/ btv380</td> | |
| 1412 </tr> | |
| 1413 <tr> | |
| 1414 <td align="center">miRTOP</td> | |
| 1415 <td align="center">Standalone<br>Linux</td> | |
| 1416 <td>● Generation of a new file format mirGFF3.<br>● It is compatible with the commonly used tools output files (sRNAbench, Prost!, isomiR-SEA, OptimiR e.g.).<br>● Converts mirGFF3 file into several different types such as count matrix, FASTA and VCF formats.<br>● Open source and community-based project.</td> | |
| 1417 <td align="center">2019</td> | |
| 1418 <td align="center">Thomas Desvignes et all.</td> | |
| 1419 <td align="center">Bioinformatics<br><br>Open Access<br><br><a href="https://academic.oup.com/bioinformatics/article/36/3/698/5556118" rel="nofollow">[URL]</a><br><br>10.1093/ bioinformatics/ btz675</td> | |
| 1420 </tr> | |
| 1421 <tr> | |
| 1422 <td align="center">Prost!</td> | |
| 1423 <td align="center">Standalone<br>Linux</td> | |
| 1424 <td>● Aligns reads to a user-defined genomic dataset.<br>● Groups reads based on their potential genomic origins, seed sequence and annotation.<br>● Reports frequencies of individual sequence variations with respect to reference genome and the most expressed sequence. <br>● Uses Cutadapt and FASTX-toolkit for preprocessing, BBMap suite for alignment, MirBase for annotation and Deseq2 for differential expression.</td> | |
| 1425 <td align="center">2019</td> | |
| 1426 <td align="center">Thomas Desvignes et all.</td> | |
| 1427 <td align="center">Nature<br><br>Open Access<br><br><a href="https://www.nature.com/articles/s41598-019-40361-8" rel="nofollow">[URL]</a><br><br>10.1038/ s41598-019- 40361-8</td> | |
| 1428 </tr> | |
| 1429 <tr> | |
| 1430 <td align="center">OptimiR</td> | |
| 1431 <td align="center">Standalone<br>Linux</td> | |
| 1432 <td>● Detect genotyping errors<br>● Suggested the existence of novel miRNAs and highlighted the allelic imbalance expression of polymiRs in heterozygous carriers.<br>● Uses Cutadapt for preprocessing, Bowtie2 for alignment and miRBase for annotation.<br>● Uses a scoring algorithm to identify the most plausible alignments.<br>● Produces a comparison analysis of genotype data provided by the user and the genotype data that could be inferred from the sequenced reads aligned to polymiRs</td> | |
| 1433 <td align="center">2019</td> | |
| 1434 <td align="center">Florian Thibord et all.</td> | |
| 1435 <td align="center">Bioinformatics<br><br>Open Access<br><br><a href="https://rnajournal.cshlp.org/content/early/2019/02/28/rna.069708.118" rel="nofollow">[URL]</a><br><br>10.1261/ rna.069708.118</td> | |
| 1436 </tr> | |
| 1437 <tr> | |
| 1438 <td align="center">isomiRs: Analyze isomiRs and miRNAs from small RNA-seq</td> | |
| 1439 <td align="center">R library</td> | |
| 1440 <td>● Uses as input file the count matrix<br>● Includes various functions for characterization of miRNAs and isomiRs, clustering, differential expression and visualizations.<br>● Designed to analyze the output of SeqBuster tool or any other tool after converting to the desire format<br>● user can control the analysis step by step.</td> | |
| 1441 <td align="center">2020</td> | |
| 1442 <td align="center">Pantano L, Escaramis G</td> | |
| 1443 <td align="center">Bioconductor<br><br><a href="http://bioconductor.org/packages/release/bioc/html/isomiRs.html" rel="nofollow">[URL]</a><br><br>10.18129/ B9.bioc.isomiRs</td> | |
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