# HG changeset patch
# User glogobyte
# Date 1634743044 0
# Node ID 847318ed9a5c5fc4b47711db8e60a286ee798fcb
# Parent  0a4d6c483ff04f9b6f25f9000e3f89f195d8b871
Uploaded

diff -r 0a4d6c483ff0 -r 847318ed9a5c viz.py
--- a/viz.py	Wed Oct 20 14:45:41 2021 +0000
+++ b/viz.py	Wed Oct 20 15:17:24 2021 +0000
@@ -8,13 +8,13 @@
 starttime = time.time()
 
 parser = argparse.ArgumentParser()
-parser.add_argument("-in", "--input", help="choose type of analysis", action="store")
-parser.add_argument("-p_value", "--pval", help="choose type of analysis", action="store")
-parser.add_argument("-fc", "--log2fc", help="choose type of analysis", action="store")
-parser.add_argument("-top", "--top_mirnas", help="choose type of analysis", action="store")
+parser.add_argument("-in", "--input", help="input file from Deseq2 or EdgeR", action="store")
+parser.add_argument("-p_value", "--pval", help="p-value or p-adj threshold", action="store")
+parser.add_argument("-fc", "--log2fc", help="log2fc threshold", action="store")
+parser.add_argument("-top", "--top_mirnas", help="Top significant genes", action="store")
 parser.add_argument("-tool_dir", "--tool_directory", help="tool directory path", action="store")
-parser.add_argument("-statistic", "--stat", help="tool directory path", action="store")
-parser.add_argument("-diff_tool", "--tool", help="tool directory path", action="store")
+parser.add_argument("-statistic", "--stat", help="Filter option by p-value or p-adj or basemean (only for Deseq2)", action="store")
+parser.add_argument("-diff_tool", "--tool", help="Choose tool for Differential expression Deseq2 or EdgeR", action="store")
 
 args = parser.parse_args()