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comparison vitessce_spatial.py @ 7:64609b94f90f draft default tip

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/vitessce commit 52576a03742abfab8a623c06e22624f1d8423e3d
author goeckslab
date Mon, 21 Jul 2025 16:47:50 +0000
parents e860ca30cd0b
children
comparison
equal deleted inserted replaced
6:db3053f1b878 7:64609b94f90f
81 dataset=dataset, 81 dataset=dataset,
82 w=lc_dims[0], 82 w=lc_dims[0],
83 h=lc_dims[1]) 83 h=lc_dims[1])
84 84
85 # Build the prefix that Vitessce should use 85 # Build the prefix that Vitessce should use
86 display_prefix = (f"{galaxy_url}/api/datasets/{dataset_id}/display?filename=") 86 display_prefix = f"{galaxy_url}/api/datasets/{dataset_id}/extra_files/raw"
87 87
88 # if no anndata file, export the config with these minimal components 88 # if no anndata file, export the config with these minimal components
89 if not anndata: 89 if not anndata:
90 vc.layout(lc | spatial) 90 vc.layout(lc | spatial)
91 config_dict = vc.export( 91 config_dict = vc.export(