Mercurial > repos > goeckslab > gate_finder
diff gate_finder.xml @ 1:8097f9124f87 draft
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/vitessce commit 130ef7e8ae6cab35866b72617e53d35acc11475a
author | goeckslab |
---|---|
date | Wed, 28 Feb 2024 20:53:12 +0000 |
parents | 6df8d6e42152 |
children |
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--- a/gate_finder.xml Thu Sep 08 17:22:53 2022 +0000 +++ b/gate_finder.xml Wed Feb 28 20:53:12 2024 +0000 @@ -1,8 +1,11 @@ -<tool id="gate_finder" name="Gate Finder" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> - <description>displays a series of gating outcomes using Vitessce</description> +<tool id="gate_finder" name="Perform gating" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> + <description>with Vitessce</description> <macros> <import>main_macros.xml</import> </macros> + <edam_operations> + <edam_operation>operation_3443</edam_operation> + </edam_operations> <expand macro="vitessce_requirements"/> <expand macro="macro_stdio" /> <version_command>echo "@VERSION@"</version_command> @@ -14,7 +17,7 @@ <param name="image" type="data" format="ome.tiff" label="Select the image (OME-TIFF)" /> <param name="masks" type="data" format="tiff,ome.tiff" optional="true" label="Select masks for the OME Tiff image (Optional)" /> <section name="do_phenotyping" title=" "> - <param name="phenotyping_choice" type="hidden" value="true"/> + <param name="phenotyping_choice" type="hidden" value="add_h5ad"/> </section> <param name="phenotyping_choice" type="hidden" value="yes" /> <param name="anndata" type="data" format="h5ad" label="Select the anndata containing marker intensities" />