Mercurial > repos > goeckslab > ludwig_evaluate

comparison ludwig_render_config.py @ 0:70a4d910f09a draft default tip

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planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
author goeckslab
date Tue, 07 Jan 2025 22:46:16 +0000
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-1:000000000000 0:70a4d910f09a
1 import json
2 import logging
3 import sys
4
5 from ludwig.constants import (
6 COMBINER,
7 HYPEROPT,
8 INPUT_FEATURES,
9 MODEL_TYPE,
10 OUTPUT_FEATURES,
11 PROC_COLUMN,
12 TRAINER,
13 )
14 from ludwig.schema.model_types.utils import merge_with_defaults
15
16 import yaml
17
18 logging.basicConfig(level=logging.DEBUG)
19 LOG = logging.getLogger(__name__)
20 inputs = sys.argv[1]
21 with open(inputs, 'r') as handler:
22 params = json.load(handler)
23
24 config = {}
25 # input features
26 config[INPUT_FEATURES] = []
27 for ftr in params[INPUT_FEATURES]['input_feature']:
28 config[INPUT_FEATURES].append(ftr['input_feature_selector'])
29
30 # output features
31 config[OUTPUT_FEATURES] = []
32 for ftr in params[OUTPUT_FEATURES]['output_feature']:
33 config[OUTPUT_FEATURES].append(ftr['output_feature_selector'])
34
35 # combiner
36 config[COMBINER] = params[COMBINER]
37
38 # training
39 config[TRAINER] = params[TRAINER][TRAINER]
40 config[MODEL_TYPE] = config[TRAINER].pop(MODEL_TYPE)
41
42 # hyperopt
43 if params[HYPEROPT]['do_hyperopt'] == 'true':
44 config[HYPEROPT] = params[HYPEROPT][HYPEROPT]
45
46 with open('./pre_config.yml', 'w') as f:
47 yaml.safe_dump(config, f, allow_unicode=True, default_flow_style=False)
48
49 output = sys.argv[2]
50 output_config = merge_with_defaults(config)
51
52
53 def clean_proc_column(config: dict) -> None:
54 for ftr in config[INPUT_FEATURES]:
55 ftr.pop(PROC_COLUMN, None)
56 for ftr in config[OUTPUT_FEATURES]:
57 ftr.pop(PROC_COLUMN, None)
58
59
60 clean_proc_column(output_config)
61
62 with open(output, "w") as f:
63 yaml.safe_dump(output_config, f, sort_keys=False)