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annotate macros.xml @ 1:02abff468d60 draft

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
author goeckslab
date Thu, 10 Nov 2022 20:38:34 +0000
parents 53240d7c1fc5
children 187918c47051
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53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
goeckslab
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1 <?xml version="1.0"?>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
goeckslab
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2 <macros>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
goeckslab
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3 <xml name="requirements">
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
goeckslab
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4 <requirements>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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5 <container type="docker">quay.io/goeckslab/mesmer:@TOOL_VERSION@</container>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
goeckslab
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6 </requirements>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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7 </xml>
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02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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8 <xml name="stdio">
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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9 <stdio>
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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10 <regex match="MemoryError"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
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11 source="both"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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12 level="fatal_oom"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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13 description="Out of Memory" />
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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14 <regex match="std::bad_alloc"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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15 source="both"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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16 level="fatal_oom"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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17 description="Out of Memory" />
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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18 <regex match="java.lang.OutOfMemoryError"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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19 source="both"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
parents: 0
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20 level="fatal_oom"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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21 description="Out of Memory" />
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
parents: 0
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22 <regex match="Out of memory"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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23 source="both"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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24 level="fatal_oom"
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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25 description="Out of Memory" />
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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26 </stdio>
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
goeckslab
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27 </xml>
0
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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28 <xml name="version_cmd">
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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29 <version_command>@CMD_BEGIN@ --help</version_command>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
goeckslab
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30 </xml>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
goeckslab
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31 <xml name="citations">
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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32 <citations>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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33 <citation type="doi">10.1038/s41587-021-01094-0</citation>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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34 </citations>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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35 </xml>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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36
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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37 <token name="@TOOL_VERSION@">0.3.1</token>
1
02abff468d60 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
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38 <token name="@VERSION_SUFFIX@">1</token>
0
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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39 <token name="@CMD_BEGIN@">python /usr/src/app/run_app.py mesmer</token>
53240d7c1fc5 planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 5fb6aa9066c68d9972b3cc4be13503a952f952a5
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40 </macros>