Mercurial > repos > goeckslab > mesmer

comparison macros.xml @ 1:02abff468d60 draft

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
author goeckslab
date Thu, 10 Nov 2022 20:38:34 +0000
parents 53240d7c1fc5
children 187918c47051
comparison
equal deleted inserted replaced
0:53240d7c1fc5 1:02abff468d60
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <container type="docker">quay.io/goeckslab/mesmer:@TOOL_VERSION@</container> 5 <container type="docker">quay.io/goeckslab/mesmer:@TOOL_VERSION@</container>
6 </requirements> 6 </requirements>
7 </xml> 7 </xml>
8 8 <xml name="stdio">
9 <stdio>
10 <regex match="MemoryError"
11 source="both"
12 level="fatal_oom"
13 description="Out of Memory" />
14 <regex match="std::bad_alloc"
15 source="both"
16 level="fatal_oom"
17 description="Out of Memory" />
18 <regex match="java.lang.OutOfMemoryError"
19 source="both"
20 level="fatal_oom"
21 description="Out of Memory" />
22 <regex match="Out of memory"
23 source="both"
24 level="fatal_oom"
25 description="Out of Memory" />
26 </stdio>
27 </xml>
9 <xml name="version_cmd"> 28 <xml name="version_cmd">
10 <version_command>@CMD_BEGIN@ --help</version_command> 29 <version_command>@CMD_BEGIN@ --help</version_command>
11 </xml> 30 </xml>
12 <xml name="citations"> 31 <xml name="citations">
13 <citations> 32 <citations>
14 <citation type="doi">10.1038/s41587-021-01094-0</citation> 33 <citation type="doi">10.1038/s41587-021-01094-0</citation>
15 </citations> 34 </citations>
16 </xml> 35 </xml>
17 36
18 <token name="@TOOL_VERSION@">0.3.1</token> 37 <token name="@TOOL_VERSION@">0.3.1</token>
19 <token name="@VERSION_SUFFIX@">0</token> 38 <token name="@VERSION_SUFFIX@">1</token>
20 <token name="@CMD_BEGIN@">python /usr/src/app/run_app.py mesmer</token> 39 <token name="@CMD_BEGIN@">python /usr/src/app/run_app.py mesmer</token>
21 </macros> 40 </macros>