Mercurial > repos > goeckslab > mesmer
diff macros.xml @ 1:02abff468d60 draft
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit 374e4528db4e3ce7984e2ed2c2bae55c19c17371
| author | goeckslab |
|---|---|
| date | Thu, 10 Nov 2022 20:38:34 +0000 |
| parents | 53240d7c1fc5 |
| children | 187918c47051 |
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--- a/macros.xml Thu Sep 08 15:17:30 2022 +0000 +++ b/macros.xml Thu Nov 10 20:38:34 2022 +0000 @@ -5,7 +5,26 @@ <container type="docker">quay.io/goeckslab/mesmer:@TOOL_VERSION@</container> </requirements> </xml> - + <xml name="stdio"> + <stdio> + <regex match="MemoryError" + source="both" + level="fatal_oom" + description="Out of Memory" /> + <regex match="std::bad_alloc" + source="both" + level="fatal_oom" + description="Out of Memory" /> + <regex match="java.lang.OutOfMemoryError" + source="both" + level="fatal_oom" + description="Out of Memory" /> + <regex match="Out of memory" + source="both" + level="fatal_oom" + description="Out of Memory" /> + </stdio> + </xml> <xml name="version_cmd"> <version_command>@CMD_BEGIN@ --help</version_command> </xml> @@ -16,6 +35,6 @@ </xml> <token name="@TOOL_VERSION@">0.3.1</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@CMD_BEGIN@">python /usr/src/app/run_app.py mesmer</token> </macros>