Mercurial > repos > goeckslab > mesmer
diff mesmer.xml @ 3:c60b810d570d draft
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit caf99c99d5698c3524e6eb7fd43c0197c2a3b3cb
| author | goeckslab |
|---|---|
| date | Tue, 28 Nov 2023 19:46:58 +0000 |
| parents | 187918c47051 |
| children | 2675ff99a53b |
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--- a/mesmer.xml Wed Dec 28 19:26:02 2022 +0000 +++ b/mesmer.xml Tue Nov 28 19:46:58 2023 +0000 @@ -46,7 +46,7 @@ #if $compartment_select.nuclear_options.pixel_expansion != '': 'pixel_expansion': $compartment_select.nuclear_options.pixel_expansion, #end if - #for $key, $value in $dict.items($compartment_select.nuclear_options.adv_options) + #for $key, $value in $compartment_select.nuclear_options.adv_options.items(): '$key': $value, #end for 'maxima_threshold': $compartment_select.nuclear_options.maxima_threshold @@ -59,7 +59,7 @@ #if $compartment_select.compartment != 'nuclear': wc_kwargs = { - #for $key, $value in $dict.items($compartment_select.wc_options.adv_options) + #for $key, $value in $compartment_select.wc_options.adv_options.items(): '$key': $value, #end for 'maxima_threshold': $compartment_select.wc_options.maxima_threshold @@ -147,7 +147,7 @@ </data> </outputs> <tests> - <test> + <test expect_num_outputs="1"> <param name="image" value="deepcell_test.tiff" ftype="tiff"/> <param name="compartment" value="nuclear" /> <param name="image_mpp" value="0.65" /> @@ -158,7 +158,7 @@ </assert_contents> </output> </test> - <test> + <test expect_num_outputs="1"> <param name="image" value="deepcell_test.tiff" ftype="tiff"/> <param name="compartment" value="whole-cell" /> <param name="wc_channels" value="0, 1" /> @@ -171,7 +171,7 @@ </assert_contents> </output> </test> - <test> + <test expect_num_outputs="2"> <param name="image" value="deepcell_test.tiff" ftype="tiff"/> <param name="compartment" value="both" /> <param name="image_mpp" value="0.65" />