Mercurial > repos > goeckslab > mesmer

changeset 3:c60b810d570d draft

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mesmer commit caf99c99d5698c3524e6eb7fd43c0197c2a3b3cb
author goeckslab
date Tue, 28 Nov 2023 19:46:58 +0000
parents 187918c47051
children 2675ff99a53b
files macros.xml mesmer.xml
diffstat 2 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Wed Dec 28 19:26:02 2022 +0000
+++ b/macros.xml	Tue Nov 28 19:46:58 2023 +0000
@@ -62,5 +62,5 @@
     </xml>
 
     <token name="@TOOL_VERSION@">0.12.3</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@VERSION_SUFFIX@">3</token>
 </macros>
--- a/mesmer.xml	Wed Dec 28 19:26:02 2022 +0000
+++ b/mesmer.xml	Tue Nov 28 19:46:58 2023 +0000
@@ -46,7 +46,7 @@
         #if $compartment_select.nuclear_options.pixel_expansion != '':
     'pixel_expansion': $compartment_select.nuclear_options.pixel_expansion,
         #end if
-        #for $key, $value in $dict.items($compartment_select.nuclear_options.adv_options)
+        #for $key, $value in $compartment_select.nuclear_options.adv_options.items():
     '$key': $value,
         #end for
     'maxima_threshold': $compartment_select.nuclear_options.maxima_threshold
@@ -59,7 +59,7 @@
 
     #if $compartment_select.compartment != 'nuclear':
     wc_kwargs = {
-        #for $key, $value in $dict.items($compartment_select.wc_options.adv_options)
+        #for $key, $value in $compartment_select.wc_options.adv_options.items():
     '$key': $value,
         #end for
     'maxima_threshold': $compartment_select.wc_options.maxima_threshold
@@ -147,7 +147,7 @@
         </data>
     </outputs>
     <tests>
-         <test>
+         <test expect_num_outputs="1">
             <param name="image" value="deepcell_test.tiff" ftype="tiff"/>
             <param name="compartment" value="nuclear" />
             <param name="image_mpp" value="0.65" />
@@ -158,7 +158,7 @@
                 </assert_contents>
             </output>
         </test>
-         <test>
+         <test expect_num_outputs="1">
             <param name="image" value="deepcell_test.tiff" ftype="tiff"/>
             <param name="compartment" value="whole-cell" />
             <param name="wc_channels" value="0, 1" />
@@ -171,7 +171,7 @@
                 </assert_contents>
             </output>
         </test>
-         <test>
+         <test expect_num_outputs="2">
             <param name="image" value="deepcell_test.tiff" ftype="tiff"/>
             <param name="compartment" value="both" />
             <param name="image_mpp" value="0.65" />