Mercurial > repos > goeckslab > scimap_mcmicro_to_anndata
comparison main_macros.xml @ 0:2a3152751ca8 draft
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/scimap commit b19cb55dfb751cccc857b95a432890299bfeebb5
| author | goeckslab |
|---|---|
| date | Tue, 19 Jul 2022 20:29:59 +0000 |
| parents | |
| children | 8ca435ec19be |
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| -1:000000000000 | 0:2a3152751ca8 |
|---|---|
| 1 <macros> | |
| 2 <token name="@TOOL_VERSION@">0.0.1</token> | |
| 3 <token name="@VERSION_SUFFIX@">0</token> | |
| 4 <token name="@PROFILE@">20.01</token> | |
| 5 | |
| 6 <xml name="scimap_requirements"> | |
| 7 <requirements> | |
| 8 <container type="docker">quay.io/goeckslab/scimap:0.17.7</container> | |
| 9 <yield /> | |
| 10 </requirements> | |
| 11 </xml> | |
| 12 | |
| 13 <xml name="macro_stdio"> | |
| 14 <stdio> | |
| 15 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" /> | |
| 16 </stdio> | |
| 17 </xml> | |
| 18 | |
| 19 <xml name="scimap_spatial_options" token_label="spatial_aggregate"> | |
| 20 <section name="options" title="Advanced Options" expanded="false"> | |
| 21 <param argument="x_coordinate" type="text" value="X_centroid" optional="false" label="Column name containing the x-coordinates values" /> | |
| 22 <param argument="y_coordinate" type="text" value="Y_centroid" optional="false" label="Column name containing the y-coordinates values" /> | |
| 23 <yield/> | |
| 24 <param argument="imageid" type="text" value="imageid" optional="true" label="Column name of the column containing the image id" /> | |
| 25 <param argument="subset" type="text" value="" optional="true" label="Imageid of a single image to be subsetted for analyis" /> | |
| 26 <param argument="label" type="text" value="@LABEL@" optional="true" label="Key for the returned data" help="Stored in adata.obs" /> | |
| 27 </section> | |
| 28 </xml> | |
| 29 </macros> |