Mercurial > repos > goeckslab > scimap_mcmicro_to_anndata
diff mcmicro_to_anndata.py @ 2:4c767e1a9e7c draft
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/scimap commit 9fb5578191db8a559191e45156cfb95350f01aea
author | goeckslab |
---|---|
date | Mon, 10 Jun 2024 18:45:21 +0000 |
parents | 2a3152751ca8 |
children |
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--- a/mcmicro_to_anndata.py Mon Aug 29 23:54:52 2022 +0000 +++ b/mcmicro_to_anndata.py Mon Jun 10 18:45:21 2024 +0000 @@ -31,7 +31,11 @@ if v == '': options[k] = None - adata = sm.pp.mcmicro_to_scimap(image_path, drop_markers=drop_markers, **options) + adata = sm.pp.mcmicro_to_scimap( + image_path, + drop_markers=drop_markers, + **options + ) adata.write(outfile)