Mercurial > repos > goeckslab > scimap_phenotyping

comparison main_macros.xml @ 0:7ed4b55b11f7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/scimap commit b19cb55dfb751cccc857b95a432890299bfeebb5
author goeckslab
date Tue, 19 Jul 2022 20:29:22 +0000
parents
children dcfcad35e847
comparison
equal deleted inserted replaced
-1:000000000000 0:7ed4b55b11f7
1 <macros>
2 <token name="@TOOL_VERSION@">0.0.1</token>
3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PROFILE@">20.01</token>
5
6 <xml name="scimap_requirements">
7 <requirements>
8 <container type="docker">quay.io/goeckslab/scimap:0.17.7</container>
9 <yield />
10 </requirements>
11 </xml>
12
13 <xml name="macro_stdio">
14 <stdio>
15 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
16 </stdio>
17 </xml>
18
19 <xml name="scimap_spatial_options" token_label="spatial_aggregate">
20 <section name="options" title="Advanced Options" expanded="false">
21 <param argument="x_coordinate" type="text" value="X_centroid" optional="false" label="Column name containing the x-coordinates values" />
22 <param argument="y_coordinate" type="text" value="Y_centroid" optional="false" label="Column name containing the y-coordinates values" />
23 <yield/>
24 <param argument="imageid" type="text" value="imageid" optional="true" label="Column name of the column containing the image id" />
25 <param argument="subset" type="text" value="" optional="true" label="Imageid of a single image to be subsetted for analyis" />
26 <param argument="label" type="text" value="@LABEL@" optional="true" label="Key for the returned data" help="Stored in adata.obs" />
27 </section>
28 </xml>
29 </macros>