Mercurial > repos > goeckslab > scimap_phenotyping

comparison main_macros.xml @ 1:dcfcad35e847 draft

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/scimap commit d20d6f5d08b43de71182459f8a6452c564a5becc
author goeckslab
date Mon, 29 Aug 2022 23:55:18 +0000
parents 7ed4b55b11f7
children ce22e846c5e4
comparison
equal deleted inserted replaced
0:7ed4b55b11f7 1:dcfcad35e847
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">0.0.1</token> 2 <token name="@TOOL_VERSION@">0.17.7</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PROFILE@">20.01</token> 4 <token name="@PROFILE@">20.01</token>
5 5
6 <xml name="scimap_requirements"> 6 <xml name="scimap_requirements">
7 <requirements> 7 <requirements>
8 <container type="docker">quay.io/goeckslab/scimap:0.17.7</container> 8 <container type="docker">quay.io/goeckslab/scimap:@TOOL_VERSION@</container>
9 <yield /> 9 <yield />
10 </requirements> 10 </requirements>
11 </xml> 11 </xml>
12 12
13 <xml name="macro_stdio"> 13 <xml name="macro_stdio">
14 <stdio> 14 <stdio>
15 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" /> 15 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
16 </stdio> 16 </stdio>
17 </xml> 17 </xml>
18 18 <xml name="citations">
19 <citations>
20 <citation type="doi">10.1158/2159-8290.CD-21-1357</citation>
21 </citations>
22 </xml>
19 <xml name="scimap_spatial_options" token_label="spatial_aggregate"> 23 <xml name="scimap_spatial_options" token_label="spatial_aggregate">
20 <section name="options" title="Advanced Options" expanded="false"> 24 <section name="options" title="Advanced Options" expanded="false">
21 <param argument="x_coordinate" type="text" value="X_centroid" optional="false" label="Column name containing the x-coordinates values" /> 25 <param argument="x_coordinate" type="text" value="X_centroid" optional="false" label="Column name containing the x-coordinates values" />
22 <param argument="y_coordinate" type="text" value="Y_centroid" optional="false" label="Column name containing the y-coordinates values" /> 26 <param argument="y_coordinate" type="text" value="Y_centroid" optional="false" label="Column name containing the y-coordinates values" />
23 <yield/> 27 <yield/>